LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006016
hsa-miR-1-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1416
0.075
10
RP11-475A13.1
hsa-miR-1-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558963
Biotype: lincRNA
Gene id: ENSG00000259737
Gene Name: RP11-475A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2942-2954
0.070
1
6mer
1892-1902
0.005
5
XLOC_011193
hsa-miR-1-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023891
Biotype: transcript isomorph
Gene id: XLOC_011193
Gene Name: XLOC_011193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-110
0.074
0
LINC00924
hsa-miR-1-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556053
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-535
0.074
11
CTC-523E23.1
hsa-miR-1-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561778
Biotype: lincRNA
Gene id: ENSG00000261754
Gene Name: CTC-523E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-156
0.050
2
7mer
410-430
0.014
1
6mer
1660-1675
0.006
5
6mer
1065-1087
0.002
1
XLOC_010986
hsa-miR-1-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022697
Biotype: transcript isomorph
Gene id: XLOC_010986
Gene Name: XLOC_010986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-212
0.073
6
RP1-309I22.2
hsa-miR-1-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23791-23818
0.031
9
7mer
24415-24433
0.012
10
7mer
6928-6947
0.004
1
7mer
11142-11162
0.004
1
7mer
5475-5501
0.004
2
6mer
28150-28171
0.003
0
6mer
11622-11638
0.002
4
6mer
15569-15587
0.002
2
6mer
6023-6041
0.002
1
6mer
27477-27482
0.002
0
6mer
9857-9873
0.002
1
6mer
14682-14697
0.001
1
6mer
26727-26751
0.001
4
6mer
12608-12622
0.001
2
6mer
17003-17013
0.001
0
6mer
12634-12651
0.001
5
MIR4534
hsa-miR-1-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11215-11238
0.009
1
8mer
17115-17133
0.006
0
7mer
53-68
0.006
0
7mer
52520-52539
0.005
1
7mer
41867-41873
0.005
5
8mer
8924-8944
0.004
0
7mer
44946-44956
0.003
1
6mer
34735-34758
0.003
8
7mer
20361-20383
0.003
1
7mer
16552-16568
0.002
1
6mer
31653-31668
0.002
7
7mer
9406-9423
0.002
1
6mer
24861-24865
0.002
4
6mer
8607-8612
0.002
1
6mer
32074-32080
0.002
0
7mer
27970-27996
0.002
Not Conserved
6mer
31128-31141
0.002
4
6mer
47002-47011
0.001
1
6mer
38505-38525
0.001
1
6mer
42086-42096
0.001
0
6mer
50662-50678
0.001
2
6mer
6425-6448
0.001
1
6mer
40024-40039
0.001
1
6mer
41117-41133
0.001
0
6mer
50343-50364
0.001
3
6mer
50196-50205
0.001
1
6mer
19520-19534
0.001
1
6mer
32197-32215
0.001
1
6mer
14082-14100
0.001
Not Conserved
6mer
50698-50716
0.001
3
XLOC_006661
hsa-miR-1-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014015
Biotype: transcript isomorph
Gene id: XLOC_006661
Gene Name: XLOC_006661
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-61
0.009
Not Conserved
7mer
121-140
0.004
Not Conserved
6mer
64-81
0.004
Not Conserved
6mer
18-38
0.004
Not Conserved
6mer
104-126
0.004
Not Conserved
7mer
276-289
0.004
Not Conserved
6mer
155-177
0.004
Not Conserved
7mer
534-559
0.004
Not Conserved
7mer
463-476
0.003
Not Conserved
6mer
253-270
0.003
Not Conserved
6mer
196-207
0.003
Not Conserved
6mer
292-309
0.003
Not Conserved
6mer
215-232
0.003
Not Conserved
6mer
588-605
0.003
Not Conserved
6mer
355-374
0.003
Not Conserved
6mer
329-346
0.003
Not Conserved
6mer
483-500
0.002
Not Conserved
6mer
389-406
0.002
Not Conserved
6mer
411-428
0.002
Not Conserved
6mer
517-539
0.002
Not Conserved
RP11-46H11.3
hsa-miR-1-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3158-3182
0.052
0
6mer
2981-2994
0.019
0
PROX1-AS1
hsa-miR-1-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609394
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
598-620
0.064
3
6mer
152-172
0.006
1
AC006380.3
hsa-miR-1-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433356
Biotype: lincRNA
Gene id: ENSG00000231418
Gene Name: AC006380.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
524-535
0.038
9
8mer
425-431
0.023
1
6mer
234-249
0.005
2
6mer
230-244
0.004
0
NEAT1
hsa-miR-1-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8237-8250
0.018
1
8mer
14318-14336
0.012
1
8mer
20276-20292
0.007
1
8mer+wobble
12523-12540
0.007
1
7mer
16181-16198
0.006
3
7mer
19292-19317
0.003
1
7mer
21396-21401
0.002
0
7mer
20754-20776
0.002
2
6mer
19613-19618
0.002
2
6mer
13927-13949
0.002
1
6mer
9046-9062
0.002
1
6mer
1862-1880
0.002
1
6mer
10140-10160
0.001
0
6mer
5606-5627
0.001
0
6mer
14776-14792
0.001
1
6mer
8237-8254
0.001
1
XLOC_012997
hsa-miR-1-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1067-1087
0.034
1
7mer
1208-1224
0.022
1
6mer
610-620
0.011
1
RP11-142G1.1
hsa-miR-1-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568286
Biotype: lincRNA
Gene id: ENSG00000260478
Gene Name: RP11-142G1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
385-403
0.068
1
MIR6818
hsa-miR-1-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8483-8489
0.007
3
7mer
34211-34219
0.006
4
8mer
5451-5468
0.005
1
7mer
46942-46968
0.005
4
7mer
29567-29573
0.005
1
7mer
45418-45440
0.004
0
7mer
35881-35900
0.003
1
6mer
16981-16997
0.003
2
7mer
25333-25359
0.002
2
6mer
22765-22778
0.002
2
6mer
48312-48323
0.002
1
6mer
3961-3987
0.002
5
6mer
26752-26770
0.002
4
6mer
25058-25079
0.002
4
6mer
31849-31864
0.002
1
6mer
31630-31651
0.002
0
6mer
15329-15346
0.002
1
6mer
24607-24634
0.002
0
6mer
24788-24815
0.002
0
6mer
38269-38285
0.001
0
6mer
37406-37410
0.001
2
6mer
17694-17714
0.001
Not Conserved
6mer
10721-10736
0.001
1
6mer
19681-19706
0.001
Not Conserved
6mer
10654-10669
0.001
1
RP11-31I22.2
hsa-miR-1-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584863
Biotype: antisense
Gene id: ENSG00000265115
Gene Name: RP11-31I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-507
0.056
4
7mer
156-179
0.008
1
6mer
170-186
0.003
1
RP13-81N3.2
hsa-miR-1-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541949
Biotype: lincRNA
Gene id: ENSG00000256888
Gene Name: RP13-81N3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-333
0.049
1
7mer
16-33
0.012
0
6mer
479-494
0.005
0
XLOC_005505
hsa-miR-1-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011198
Biotype: transcript isomorph
Gene id: XLOC_005505
Gene Name: XLOC_005505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
937-947
0.040
1
7mer
573-597
0.016
1
6mer
97-119
0.007
1
6mer
767-785
0.003
Not Conserved
LINC00557
hsa-miR-1-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563184
Biotype: lincRNA
Gene id: ENSG00000260962
Gene Name: LINC00557
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1174-1193
0.056
0
7mer
817-830
0.009
Not Conserved
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