LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
ST7-AS2
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446784
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1048-1073
0.017
0
7mer
968-976
0.008
1
LINC01016
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000525746
Biotype: lincRNA
Gene id: ENSG00000249346
Gene Name: LINC01016
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-308
0.010
1
6mer
39-43
0.008
0
6mer
296-320
0.005
1
6mer
445-466
0.003
0
TTTY23
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000452889
Biotype: lincRNA
Gene id: ENSG00000239225
Gene Name: TTTY23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-236
0.019
Not Conserved
7mer
59-77
0.006
Not Conserved
AC104777.4
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110247.1
Biotype: lincRNA
Gene id: NR_110247.1 (gene)
Gene Name: AC104777.4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-381
0.025
1
RP11-531A24.5
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517664
Biotype: antisense
Gene id: ENSG00000253636
Gene Name: RP11-531A24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3325-3340
0.019
1
6mer
982-999
0.003
1
7mer
662-688
0.003
Not Conserved
SOX9-AS1
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000533232
Biotype: retained_intron
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
363-377
0.009
1
7mer
1592-1611
0.007
1
7mer
1054-1078
0.005
0
6mer
1142-1155
0.003
Not Conserved
6mer
1118-1130
0.002
0
FAM87B
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103536.1
Biotype: lincRNA
Gene id: NR_103536.1 (gene)
Gene Name: FAM87B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1502-1523
0.018
1
6mer
1902-1920
0.007
1
LINC00347
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601480
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
655-671
0.016
4
7mer
234-239
0.009
0
H19
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000422826
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-71
0.025
2
RP11-421P23.1
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517573
Biotype: lincRNA
Gene id: ENSG00000253199
Gene Name: RP11-421P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
858-871
0.025
1
ALMS1-IT1
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441587
Biotype: sense_intronic
Gene id: ENSG00000230002
Gene Name: ALMS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1274-1292
0.013
1
7mer
1000-1018
0.012
0
FAM87B
hsa-miR-1-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000326734
Biotype: lincRNA
Gene id: ENSG00000177757
Gene Name: FAM87B
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1502-1523
0.018
1
6mer
1902-1920
0.007
1
ZNF385D-AS1
hsa-miR-1-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412369
Biotype: antisense
Gene id: ENSG00000225542
Gene Name: ZNF385D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
546-561
0.022
1
6mer
272-292
0.004
0
XIST
hsa-miR-1-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-233
0.006
0
7mer
12491-12514
0.004
0
7mer
13063-13088
0.003
1
6mer
7652-7672
0.003
6
6mer
17333-17346
0.002
3
6mer
14368-14388
0.002
2
6mer
4571-4582
0.002
3
6mer
9560-9579
0.001
1
6mer
14977-14992
0.001
0
XLOC_012614
hsa-miR-1-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026245
Biotype: transcript isomorph
Gene id: XLOC_012614
Gene Name: XLOC_012614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-852
0.018
1
6mer
1072-1083
0.008
2
AADACL2-AS1
hsa-miR-1-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483843
Biotype: antisense
Gene id: ENSG00000242908
Gene Name: AADACL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-350
0.025
2
LINC00243
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1757-1774
0.025
0
DACT3-AS1
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000500689
Biotype: antisense
Gene id: ENSG00000245598
Gene Name: DACT3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-445
0.020
1
7mer
537-562
0.005
1
CTD-2140G10.2
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528009
Biotype: antisense
Gene id: ENSG00000254768
Gene Name: CTD-2140G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-25
0.025
1
H19
hsa-miR-1-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000411861
Biotype: retained_intron
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-105
0.025
2
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