LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP1-111B22.3
hsa-miR-1-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607298
Biotype: lincRNA
Gene id: ENSG00000271734
Gene Name: RP1-111B22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-16
0.026
0
XLOC_007448
hsa-miR-1-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016058
Biotype: transcript isomorph
Gene id: XLOC_007448
Gene Name: XLOC_007448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
218-244
0.017
1
6mer
32-51
0.008
0
RP11-506H20.1
hsa-miR-1-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506435
Biotype: antisense
Gene id: ENSG00000251307
Gene Name: RP11-506H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-328
0.026
1
LOC441242
hsa-miR-1-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038378.2
Biotype: sense
Gene id: NR_038378.2 (gene)
Gene Name: LOC441242
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-210
0.026
0
LINC01192
hsa-miR-1-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488173
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-317
0.014
1
6mer
131-158
0.007
2
6mer
191-211
0.004
0
RP11-742D12.2
hsa-miR-1-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624895
Biotype: TEC
Gene id: ENSG00000270112
Gene Name: RP11-742D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-81
0.014
1
7mer
4405-4419
0.012
1
RP11-728E14.3
hsa-miR-1-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3258-3271
0.011
1
6mer
3511-3527
0.008
0
7mer
2022-2040
0.007
0
LINC01192
hsa-miR-1-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493473
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-384
0.014
1
6mer
198-225
0.008
2
6mer
258-278
0.004
0
H19
hsa-miR-1-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000446406
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-65
0.026
2
CTD-2260A17.1
hsa-miR-1-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512856
Biotype: antisense
Gene id: ENSG00000248734
Gene Name: CTD-2260A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
914-940
0.026
9
XLOC_000191
hsa-miR-1-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2029-2044
0.018
0
6mer
2059-2073
0.008
0
CTB-33O18.3
hsa-miR-1-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519897
Biotype: antisense
Gene id: ENSG00000253955
Gene Name: CTB-33O18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-137
0.022
0
6mer
520-538
0.003
1
RP11-133L14.5
hsa-miR-1-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544225
Biotype: antisense
Gene id: ENSG00000256803
Gene Name: RP11-133L14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-345
0.021
3
6mer
529-546
0.004
1
RP11-81H14.2
hsa-miR-1-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546086
Biotype: lincRNA
Gene id: ENSG00000251301
Gene Name: RP11-81H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-189
0.026
4
XLOC_010248
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020983
Biotype: transcript isomorph
Gene id: XLOC_010248
Gene Name: XLOC_010248
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Liver Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-482
0.026
1
TTTY23B
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000451467
Biotype: lincRNA
Gene id: ENSG00000237069
Gene Name: TTTY23B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-293
0.019
Not Conserved
7mer
436-454
0.006
Not Conserved
XLOC_006811
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014722
Biotype: transcript isomorph
Gene id: XLOC_006811
Gene Name: XLOC_006811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-137
0.026
1
XLOC_010211
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020258
Biotype: transcript isomorph
Gene id: XLOC_010211
Gene Name: XLOC_010211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
374-394
0.008
7
6mer
927-944
0.006
3
7mer
836-859
0.006
1
6mer
1013-1032
0.005
3
XLOC_011141
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022887
Biotype: transcript isomorph
Gene id: XLOC_011141
Gene Name: XLOC_011141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-397
0.025
1
RP3-340B19.3
hsa-miR-1-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450618
Biotype: lincRNA
Gene id: ENSG00000228559
Gene Name: RP3-340B19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-331
0.025
1
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