LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011212
hsa-miR-1-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023350
Biotype: transcript isomorph
Gene id: XLOC_011212
Gene Name: XLOC_011212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-241
0.027
5
LOC442028
hsa-miR-1-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037597.1
Biotype: antisense
Gene id: NR_037597.1 (gene)
Gene Name: LOC442028
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-359
0.025
0
6mer
1579-1596
0.002
0
RP11-161M6.3
hsa-miR-1-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000599946
Biotype: lincRNA
Gene id: ENSG00000260496
Gene Name: RP11-161M6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-407
0.015
0
6mer
52-69
0.008
5
6mer
176-194
0.003
0
MLK7-AS1
hsa-miR-1-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423106
Biotype: antisense
Gene id: ENSG00000238133
Gene Name: MLK7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2031-2056
0.022
1
6mer
956-977
0.004
9
CKMT2-AS1
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503483
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-113
0.016
1
8mer
387-393
0.011
1
XLOC_011758
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024437
Biotype: transcript isomorph
Gene id: XLOC_011758
Gene Name: XLOC_011758
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1607-1629
0.019
0
6mer
616-634
0.005
2
6mer
666-684
0.003
1
AC104777.4
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443811
Biotype: lincRNA
Gene id: ENSG00000224048
Gene Name: AC104777.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-211
0.026
1
RP11-266K4.9
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000399866
Biotype: lincRNA
Gene id: ENSG00000215241
Gene Name: RP11-266K4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-85
0.015
1
6mer
64-70
0.012
2
RP11-725G5.2
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554522
Biotype: lincRNA
Gene id: ENSG00000258630
Gene Name: RP11-725G5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-276
0.012
1
7mer
861-874
0.007
0
6mer
380-396
0.005
3
6mer
936-951
0.002
1
RP11-439E19.9
hsa-miR-1-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000570141
Biotype: lincRNA
Gene id: ENSG00000260698
Gene Name: RP11-439E19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2689-2702
0.014
0
7mer
2745-2758
0.010
1
7mer
1688-1707
0.003
1
SLC8A1-AS1
hsa-miR-1-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610721
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-139
0.011
2
7mer
162-186
0.009
3
6mer
630-651
0.007
8
XLOC_006663
hsa-miR-1-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014019
Biotype: transcript isomorph
Gene id: XLOC_006663
Gene Name: XLOC_006663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-41
0.026
1
XLOC_010389
hsa-miR-1-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021550
Biotype: transcript isomorph
Gene id: XLOC_010389
Gene Name: XLOC_010389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-58
0.026
2
AC104777.4
hsa-miR-1-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110246.1
Biotype: lincRNA
Gene id: NR_110246.1 (gene)
Gene Name: AC104777.4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
356-381
0.026
1
XLOC_011448
hsa-miR-1-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9567-9585
0.011
3
7mer
1953-1967
0.007
2
7mer
3465-3486
0.004
0
6mer
9554-9572
0.002
2
6mer
8525-8546
0.002
2
XLOC_011015
hsa-miR-1-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022739
Biotype: transcript isomorph
Gene id: XLOC_011015
Gene Name: XLOC_011015
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-55
0.026
2
RP4-717I23.3
hsa-miR-1-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449305
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-605
0.013
1
7mer
356-380
0.007
1
6mer
710-732
0.006
1
LINC00582
hsa-miR-1-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448058
Biotype: antisense
Gene id: ENSG00000229228
Gene Name: LINC00582
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-110
0.026
5
LOC648987
hsa-miR-1-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-630
0.018
1
6mer
260-273
0.007
1
6mer
1176-1192
0.001
Not Conserved
AC024592.9
hsa-miR-1-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589276
Biotype: antisense
Gene id: ENSG00000267709
Gene Name: AC024592.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-918
0.015
0
7mer
713-719
0.011
0
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