LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
AC009498.1
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419860
Biotype: lincRNA
Gene id: ENSG00000237271
Gene Name: AC009498.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-256
0.027
3
XLOC_001910
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004062
Biotype: transcript isomorph
Gene id: XLOC_001910
Gene Name: XLOC_001910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-359
0.023
6
6mer
11-37
0.004
2
RP11-687F6.5
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000621730
Biotype: lincRNA
Gene id: ENSG00000274776
Gene Name: RP11-687F6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2406-2412
0.019
0
7mer
240-258
0.008
0
H19
hsa-miR-1-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000411754
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-44
0.027
2
CTD-2055G21.1
hsa-miR-1-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568437
Biotype: antisense
Gene id: ENSG00000260594
Gene Name: CTD-2055G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-446
0.027
0
XLOC_009827
hsa-miR-1-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020510
Biotype: transcript isomorph
Gene id: XLOC_009827
Gene Name: XLOC_009827
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-244
0.027
1
AC084219.3
hsa-miR-1-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591772
Biotype: antisense
Gene id: ENSG00000267163
Gene Name: AC084219.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1902-1914
0.022
1
6mer
446-473
0.005
1
AC022007.5
hsa-miR-1-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
205-222
0.021
0
7mer
53-65
0.006
Not Conserved
RP11-193H5.1
hsa-miR-1-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450451
Biotype: antisense
Gene id: ENSG00000237250
Gene Name: RP11-193H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2748-2769
0.012
4
7mer
399-423
0.011
2
7mer
1536-1552
0.003
1
XLOC_005748
hsa-miR-1-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012190
Biotype: transcript isomorph
Gene id: XLOC_005748
Gene Name: XLOC_005748
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2154-2169
0.015
4
7mer
2285-2309
0.012
3
AL133493.2
hsa-miR-1-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000424569
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-266
0.023
1
6mer
426-440
0.004
0
SPECC1L-ADORA2A
hsa-miR-1-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3076-3091
0.016
6
8mer
3582-3606
0.008
3
6mer
242-259
0.004
1
RP1-292B18.3
hsa-miR-1-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445833
Biotype: antisense
Gene id: ENSG00000232290
Gene Name: RP1-292B18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-61
0.027
2
ST7-AS2
hsa-miR-1-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456577
Biotype: antisense
Gene id: ENSG00000226367
Gene Name: ST7-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1048-1073
0.020
0
7mer
968-976
0.006
1
XLOC_001259
hsa-miR-1-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000762
Biotype: transcript isomorph
Gene id: XLOC_001259
Gene Name: XLOC_001259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-100
0.019
0
6mer
2703-2717
0.004
2
6mer
2235-2256
0.004
1
XLOC_011554
hsa-miR-1-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023251
Biotype: transcript isomorph
Gene id: XLOC_011554
Gene Name: XLOC_011554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1091-1115
0.022
1
6mer
1087-1097
0.005
1
AC093590.1
hsa-miR-1-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439734
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2241-2259
0.027
0
AC104654.1
hsa-miR-1-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418836
Biotype: lincRNA
Gene id: ENSG00000214691
Gene Name: AC104654.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-488
0.027
1
C1QTNF3-AMACR
hsa-miR-1-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3392-3412
0.015
8
8mer
1621-1645
0.008
0
6mer
3248-3263
0.004
4
SOX2-OT
hsa-miR-1-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497122
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-43
0.017
1
6mer
524-541
0.009
6
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