LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-1008C21.1
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558081
Biotype: lincRNA
Gene id: ENSG00000259225
Gene Name: RP11-1008C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-613
0.020
1
6mer
866-882
0.007
4
XLOC_008000
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017187
Biotype: transcript isomorph
Gene id: XLOC_008000
Gene Name: XLOC_008000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1022-1028
0.027
Not Conserved
XLOC_007591
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016201
Biotype: transcript isomorph
Gene id: XLOC_007591
Gene Name: XLOC_007591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-425
0.027
2
RP11-229E13.4
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000619176
Biotype: antisense
Gene id: ENSG00000274630
Gene Name: RP11-229E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-124
0.027
2
XLOC_012592
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025784
Biotype: transcript isomorph
Gene id: XLOC_012592
Gene Name: XLOC_012592
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2473-2479
0.027
2
CTD-2244C20.2
hsa-miR-1-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511474
Biotype: lincRNA
Gene id: ENSG00000248199
Gene Name: CTD-2244C20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-381
0.023
1
6mer
123-128
0.004
1
TUG1
hsa-miR-1-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
833-857
0.008
6
7mer
1702-1726
0.005
1
6mer
757-778
0.004
3
6mer
3327-3348
0.003
5
6mer
2841-2856
0.003
5
6mer
1401-1420
0.002
5
6mer
4540-4555
0.002
0
RP11-617F23.1
hsa-miR-1-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620791
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1747-1753
0.014
1
7mer
1690-1710
0.009
1
7mer
1115-1133
0.004
0
RP11-583F24.8
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528646
Biotype: antisense
Gene id: ENSG00000255244
Gene Name: RP11-583F24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-572
0.027
1
XLOC_002384
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1259-1274
0.021
0
6mer
295-313
0.006
2
AC007126.1
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508202
Biotype: lincRNA
Gene id: ENSG00000250497
Gene Name: AC007126.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4498-4518
0.013
3
7mer
440-460
0.010
1
6mer
626-645
0.004
2
XLOC_005125
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011636
Biotype: transcript isomorph
Gene id: XLOC_005125
Gene Name: XLOC_005125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1219-1224
0.016
4
7mer
1265-1279
0.007
1
6mer
184-196
0.004
1
RP11-290L1.2
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547721
Biotype: antisense
Gene id: ENSG00000257839
Gene Name: RP11-290L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-161
0.027
5
TEX26-AS1
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585582
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
315-321
0.027
2
RP11-159G9.5
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000623596
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-163
0.017
8
6mer
19-36
0.010
9
RP11-342D11.2
hsa-miR-1-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451530
Biotype: antisense
Gene id: ENSG00000238258
Gene Name: RP11-342D11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
666-680
0.027
3
CTD-3131K8.2
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000615939
Biotype: lincRNA
Gene id: ENSG00000269439
Gene Name: CTD-3131K8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-186
0.020
0
7mer
277-303
0.007
0
H19
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000417089
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-47
0.027
2
LINC01531
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000536898
Biotype: lincRNA
Gene id: ENSG00000205786
Gene Name: LINC01531
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-50
0.027
0
AC005324.6
hsa-miR-1-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000434017
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-242
0.027
1
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