LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-1-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP3-496C20.1
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569912
Biotype: antisense
Gene id: ENSG00000261202
Gene Name: RP3-496C20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-232
0.024
2
6mer
625-649
0.004
2
XLOC_002099
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003286
Biotype: transcript isomorph
Gene id: XLOC_002099
Gene Name: XLOC_002099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-327
0.015
0
6mer
60-79
0.008
1
7mer
1393-1398
0.004
Not Conserved
RP1-81P11.1
hsa-miR-1-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552060
Biotype: lincRNA
Gene id: ENSG00000257677
Gene Name: RP1-81P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.028
1
LINC00691
hsa-miR-1-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436123
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2445-2462
0.016
0
7mer
1632-1657
0.007
1
6mer
2541-2561
0.004
1
LINC01490
hsa-miR-1-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551399
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
892-913
0.018
1
6mer
789-805
0.007
6
6mer
982-1006
0.003
0
LINC00152
hsa-miR-1-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414584
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-66
0.016
0
8mer
421-439
0.011
0
TSC22D1-AS1
hsa-miR-1-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617014
Biotype: antisense
Gene id: ENSG00000278156
Gene Name: TSC22D1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1252-1260
0.025
1
6mer
937-952
0.003
2
XLOC_001549
hsa-miR-1-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003751
Biotype: transcript isomorph
Gene id: XLOC_001549
Gene Name: XLOC_001549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-110
0.028
0
RP11-675F6.4
hsa-miR-1-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519764
Biotype: lincRNA
Gene id: ENSG00000254100
Gene Name: RP11-675F6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-314
0.028
7
TEX41
hsa-miR-1-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602108
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-49
0.017
4
7mer
659-670
0.010
0
XLOC_004269
hsa-miR-1-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009233
Biotype: transcript isomorph
Gene id: XLOC_004269
Gene Name: XLOC_004269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1933-1950
0.027
1
XLOC_009788
hsa-miR-1-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020456
Biotype: transcript isomorph
Gene id: XLOC_009788
Gene Name: XLOC_009788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-457
0.014
3
6mer
4669-4688
0.005
1
6mer
820-836
0.004
2
6mer
1481-1498
0.002
0
6mer
3004-3021
0.002
1
6mer
3034-3050
0.001
4
RP11-654D12.3
hsa-miR-1-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547094
Biotype: lincRNA
Gene id: ENSG00000257725
Gene Name: RP11-654D12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-333
0.027
1
RP11-62H20.1
hsa-miR-1-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565968
Biotype: antisense
Gene id: ENSG00000261120
Gene Name: RP11-62H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-63
0.027
1
XLOC_013608
hsa-miR-1-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028263
Biotype: transcript isomorph
Gene id: XLOC_013608
Gene Name: XLOC_013608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-208
0.020
2
7mer
837-854
0.005
1
6mer
539-551
0.002
1
RP11-159G9.5
hsa-miR-1-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473136
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
439-458
0.012
8
6mer
314-331
0.011
9
6mer
896-906
0.004
6
RP11-462G2.2
hsa-miR-1-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448363
Biotype: antisense
Gene id: ENSG00000224349
Gene Name: RP11-462G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-27
0.027
Not Conserved
XLOC_001181
hsa-miR-1-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002573
Biotype: transcript isomorph
Gene id: XLOC_001181
Gene Name: XLOC_001181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
155-160
0.012
7
7mer
240-264
0.009
1
7mer
908-928
0.006
1
CTD-2260A17.2
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501338
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2142-2151
0.021
2
6mer
519-533
0.003
1
6mer
802-821
0.003
1
XLOC_012488
hsa-miR-1-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025662
Biotype: transcript isomorph
Gene id: XLOC_012488
Gene Name: XLOC_012488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-285
0.024
1
6mer
194-210
0.003
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept