LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
SRP14-AS1
hsa-miR-1-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_040059.1
Biotype: lincRNA
Gene id: NR_040059.1 (gene)
Gene Name: SRP14-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
468-484
0.026
1
6mer
1997-2011
0.002
Not Conserved
AC098617.1
hsa-miR-1-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599681
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
541-563
0.028
1
XLOC_012558
hsa-miR-1-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025741
Biotype: transcript isomorph
Gene id: XLOC_012558
Gene Name: XLOC_012558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-513
0.017
0
7mer
663-672
0.011
1
LINC01532
hsa-miR-1-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589821
Biotype: lincRNA
Gene id: ENSG00000267014
Gene Name: LINC01532
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-309
0.016
0
8mer
161-184
0.012
Not Conserved
MIR4435-1HG
hsa-miR-1-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604981
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-721
0.015
0
8mer
321-339
0.013
0
FMR1-AS1
hsa-miR-1-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1621-1638
0.020
0
7mer
1119-1141
0.005
5
6mer
1264-1268
0.002
2
RP11-575F12.2
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541419
Biotype: lincRNA
Gene id: ENSG00000256001
Gene Name: RP11-575F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-285
0.028
1
RP11-706O15.3
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000381108
Biotype: lincRNA
Gene id: ENSG00000234449
Gene Name: RP11-706O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1819-1840
0.021
1
6mer
1971-1989
0.004
0
6mer
1801-1825
0.003
1
AL133493.2
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-201
0.024
1
6mer
361-375
0.004
0
SLC8A1-AS1
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598247
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-96
0.011
2
7mer
119-143
0.009
3
6mer
587-608
0.008
8
RP11-499A10.3
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613623
Biotype: lincRNA
Gene id: ENSG00000275286
Gene Name: RP11-499A10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-51
0.028
1
POT1-AS1
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449642
Biotype: antisense
Gene id: ENSG00000224897
Gene Name: POT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-359
0.025
0
6mer
371-396
0.003
1
ERVH48-1
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1132-1146
0.016
0
6mer
1294-1312
0.011
0
GNG12-AS1
hsa-miR-1-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420587
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-292
0.028
0
CTD-2310F14.1
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606813
Biotype: antisense
Gene id: ENSG00000271828
Gene Name: CTD-2310F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
420-439
0.012
1
7mer
705-723
0.009
1
6mer
973-985
0.007
9
CTA-941F9.10
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-488
0.006
Not Conserved
7mer
7194-7212
0.006
1
7mer
8103-8115
0.005
1
6mer
21960-21984
0.003
1
6mer
17770-17792
0.002
1
6mer
3712-3733
0.002
0
6mer
1335-1360
0.002
0
6mer
4866-4888
0.001
0
AC107622.1
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455626
Biotype: lincRNA
Gene id: ENSG00000231304
Gene Name: AC107622.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1946-1969
0.024
0
6mer
356-381
0.004
2
LOC145845
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_024264.1
Biotype: lincRNA
Gene id: NR_024264.1 (gene)
Gene Name: LOC145845
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
381-387
0.019
1
6mer
2841-2858
0.004
0
6mer
823-833
0.003
2
6mer
2103-2118
0.002
Not Conserved
RP11-96P7.1
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000512279
Biotype: lincRNA
Gene id: ENSG00000250514
Gene Name: RP11-96P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1906-1911
0.012
1
6mer
1790-1796
0.007
5
6mer
351-372
0.005
2
6mer
748-774
0.003
1
LINC00152
hsa-miR-1-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414030
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-428
0.015
0
8mer
475-489
0.013
0
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