LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
POT1-AS1
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415715
Biotype: antisense
Gene id: ENSG00000224897
Gene Name: POT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-343
0.026
0
6mer
355-380
0.003
1
XLOC_013188
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026757
Biotype: transcript isomorph
Gene id: XLOC_013188
Gene Name: XLOC_013188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-167
0.015
0
7mer
740-767
0.014
0
CTD-2619J13.14
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593393
Biotype: lincRNA
Gene id: ENSG00000232098
Gene Name: CTD-2619J13.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2963-2974
0.021
1
6mer
2542-2566
0.005
1
6mer
2805-2827
0.003
0
RP11-307E17.8
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454869
Biotype: lincRNA
Gene id: ENSG00000232063
Gene Name: RP11-307E17.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-398
0.028
1
XLOC_010238
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020225
Biotype: transcript isomorph
Gene id: XLOC_010238
Gene Name: XLOC_010238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2753-2769
0.028
1
MESTIT1
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2199-2218
0.024
3
6mer
2716-2739
0.005
2
XLOC_009480
hsa-miR-1-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019680
Biotype: transcript isomorph
Gene id: XLOC_009480
Gene Name: XLOC_009480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-162
0.020
1
6mer
107-123
0.009
1
RP13-131K19.7
hsa-miR-1-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609473
Biotype: lincRNA
Gene id: ENSG00000273211
Gene Name: RP13-131K19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-438
0.018
0
7mer
254-275
0.010
1
XLOC_006008
hsa-miR-1-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013372
Biotype: transcript isomorph
Gene id: XLOC_006008
Gene Name: XLOC_006008
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-171
0.016
2
7mer
295-311
0.012
2
LINC01114
hsa-miR-1-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425879
Biotype: lincRNA
Gene id: ENSG00000234177
Gene Name: LINC01114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1650-1664
0.017
2
6mer
2120-2124
0.005
3
7mer
1517-1535
0.005
0
6mer
1588-1610
0.001
2
CCND2-AS1
hsa-miR-1-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539135
Biotype: antisense
Gene id: ENSG00000256164
Gene Name: CCND2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-213
0.028
1
LINC01448
hsa-miR-1-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455947
Biotype: lincRNA
Gene id: ENSG00000238284
Gene Name: LINC01448
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-157
0.028
1
LINC01020
hsa-miR-1-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508201
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1651-1668
0.028
1
LINC00446
hsa-miR-1-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000438327
Biotype: lincRNA
Gene id: ENSG00000229249
Gene Name: LINC00446
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-225
0.028
1
AP000462.1
hsa-miR-1-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540545
Biotype: antisense
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-453
0.028
1
LRRC37A5P
hsa-miR-1-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_034087.1
Biotype: lincRNA
Gene id: NR_034087.1 (gene)
Gene Name: LRRC37A5P
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
979-984
0.028
1
RP4-598P13.1
hsa-miR-1-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000502413
Biotype: antisense
Gene id: ENSG00000248458
Gene Name: RP4-598P13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
745-763
0.020
1
6mer
930-950
0.005
1
6mer
668-686
0.003
1
XLOC_001668
hsa-miR-1-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3069-3091
0.007
1
6mer
2149-2153
0.006
1
6mer
5437-5451
0.005
0
6mer
4879-4902
0.005
1
6mer
5853-5868
0.005
0
XLOC_011134
hsa-miR-1-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022880
Biotype: transcript isomorph
Gene id: XLOC_011134
Gene Name: XLOC_011134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-175
0.028
1
RP11-461F11.3
hsa-miR-1-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559363
Biotype: lincRNA
Gene id: ENSG00000259582
Gene Name: RP11-461F11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-179
0.028
3
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