LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP13-57D9.3
hsa-miR-1-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454131
Biotype: lincRNA
Gene id: ENSG00000228160
Gene Name: RP13-57D9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-291
0.029
3
RAB6C-AS1
hsa-miR-1-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_036537.1
Biotype: antisense
Gene id: NR_036537.1 (gene)
Gene Name: RAB6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
786-804
0.017
1
7mer
585-598
0.009
1
6mer
1196-1209
0.003
3
XLOC_008826
hsa-miR-1-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1419-1444
0.024
1
6mer
1783-1800
0.004
1
6mer
1484-1509
0.001
Not Conserved
RP11-732A21.3
hsa-miR-1-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000614441
Biotype: lincRNA
Gene id: ENSG00000277459
Gene Name: RP11-732A21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-476
0.029
4
XLOC_003704
hsa-miR-1-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008261
Biotype: transcript isomorph
Gene id: XLOC_003704
Gene Name: XLOC_003704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-211
0.025
4
6mer
1915-1936
0.003
0
AC011284.3
hsa-miR-1-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427920
Biotype: antisense
Gene id: ENSG00000236510
Gene Name: AC011284.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
747-770
0.004
1
6mer
804-808
0.004
0
6mer
463-469
0.003
1
6mer
246-268
0.003
3
6mer
690-713
0.003
0
6mer
302-325
0.003
0
6mer
520-526
0.003
0
6mer
577-599
0.002
0
6mer
358-381
0.002
0
6mer
415-438
0.002
0
RP11-240G22.4
hsa-miR-1-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614016
Biotype: lincRNA
Gene id: ENSG00000275467
Gene Name: RP11-240G22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-86
0.029
1
RP11-981P6.1
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552778
Biotype: antisense
Gene id: ENSG00000258302
Gene Name: RP11-981P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
821-843
0.027
1
6mer
746-764
0.002
1
XLOC_006894
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014499
Biotype: transcript isomorph
Gene id: XLOC_006894
Gene Name: XLOC_006894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-977
0.022
4
6mer
497-505
0.004
1
6mer
1208-1229
0.003
3
OIP5-AS1
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-667
0.011
1
7mer
8377-8394
0.009
0
6mer
8223-8248
0.005
4
6mer
492-513
0.004
1
XLOC_007554
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015746
Biotype: transcript isomorph
Gene id: XLOC_007554
Gene Name: XLOC_007554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-489
0.023
1
7mer
57-70
0.005
Not Conserved
LINC01532
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591143
Biotype: lincRNA
Gene id: ENSG00000267014
Gene Name: LINC01532
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-425
0.011
0
8mer
279-300
0.010
Not Conserved
7mer
1102-1126
0.006
Not Conserved
6mer
992-1017
0.002
0
AC011997.1
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409845
Biotype: antisense
Gene id: ENSG00000222017
Gene Name: AC011997.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
932-948
0.026
2
6mer
500-523
0.003
1
FAM87A
hsa-miR-1-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602608
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-134
0.021
1
7mer
393-398
0.008
0
RP11-1020A11.2
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602436
Biotype: antisense
Gene id: ENSG00000269982
Gene Name: RP11-1020A11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1807-1832
0.010
3
7mer
874-898
0.008
1
6mer
3620-3638
0.004
1
6mer
2208-2226
0.003
1
6mer
876-902
0.001
1
6mer
2624-2637
0.001
Not Conserved
6mer
2667-2684
0.001
0
RP11-597K23.2
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558082
Biotype: lincRNA
Gene id: ENSG00000259518
Gene Name: RP11-597K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1607-1629
0.027
1
6mer
722-748
0.001
0
KB-1732A1.1
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517910
Biotype: lincRNA
Gene id: ENSG00000253669
Gene Name: KB-1732A1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-977
0.022
4
6mer
497-505
0.003
1
6mer
1208-1229
0.003
3
XLOC_002617
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005992
Biotype: transcript isomorph
Gene id: XLOC_002617
Gene Name: XLOC_002617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-753
0.019
2
6mer
1648-1666
0.006
1
6mer
1020-1025
0.004
1
RP11-659O3.1
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508414
Biotype: lincRNA
Gene id: ENSG00000248173
Gene Name: RP11-659O3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-75
0.029
1
RP11-61I13.3
hsa-miR-1-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
555-576
0.020
11
6mer
3443-3454
0.003
1
7mer
899-921
0.003
1
7mer
1514-1530
0.002
1
6mer
1940-1958
0.001
0
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