LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
CTB-13F3.1
hsa-miR-1-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608515
Biotype: antisense
Gene id: ENSG00000273055
Gene Name: CTB-13F3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
346-365
0.029
1
TIPARP-AS1
hsa-miR-1-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463449
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
666-683
0.029
1
RP11-521E5.1
hsa-miR-1-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508942
Biotype: lincRNA
Gene id: ENSG00000251326
Gene Name: RP11-521E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-260
0.029
1
RP11-61A14.4
hsa-miR-1-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501143
Biotype: lincRNA
Gene id: ENSG00000246777
Gene Name: RP11-61A14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
773-780
0.029
1
LINC00939
hsa-miR-1-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545784
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1726-1742
0.029
1
TUG1
hsa-miR-1-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602393
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1594-1618
0.011
1
7mer
711-735
0.010
6
6mer
635-656
0.004
3
6mer
1279-1298
0.003
5
XLOC_007035
hsa-miR-1-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18973-18990
0.008
Not Conserved
7mer
8563-8580
0.006
0
8mer
15397-15414
0.005
0
8mer
16328-16344
0.003
Not Conserved
6mer
5397-5401
0.003
5
8mer
15322-15339
0.002
0
6mer
7271-7287
0.002
1
6mer
4442-4457
0.001
1
XLOC_005026
hsa-miR-1-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010506
Biotype: transcript isomorph
Gene id: XLOC_005026
Gene Name: XLOC_005026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
399-414
0.024
1
6mer
416-437
0.005
5
AC003665.1
hsa-miR-1-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000411573
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-242
0.025
3
6mer
1165-1184
0.004
1
RP11-384F7.2
hsa-miR-1-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484092
Biotype: lincRNA
Gene id: ENSG00000239268
Gene Name: RP11-384F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
100-107
0.029
1
RP11-700N1.1
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505122
Biotype: lincRNA
Gene id: ENSG00000250392
Gene Name: RP11-700N1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-476
0.026
1
6mer
322-342
0.003
0
TUB-AS1
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000506601
Biotype: sense_intronic
Gene id: ENSG00000248332
Gene Name: TUB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1828-1854
0.015
0
7mer
729-748
0.008
Not Conserved
6mer
1168-1190
0.004
2
6mer
322-339
0.003
0
XLOC_001274
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000769
Biotype: transcript isomorph
Gene id: XLOC_001274
Gene Name: XLOC_001274
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-394
0.029
1
RP5-864K19.4
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443161
Biotype: antisense
Gene id: ENSG00000228436
Gene Name: RP5-864K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-163
0.024
7
6mer
268-286
0.005
5
LINC00358
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000432697
Biotype: lincRNA
Gene id: ENSG00000229578
Gene Name: LINC00358
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-499
0.017
0
7mer
947-962
0.012
1
RP11-9N20.3
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608701
Biotype: antisense
Gene id: ENSG00000273123
Gene Name: RP11-9N20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-166
0.029
5
AC104777.4
hsa-miR-1-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427615
Biotype: lincRNA
Gene id: ENSG00000224048
Gene Name: AC104777.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-298
0.025
1
6mer
97-111
0.004
2
RP11-373N22.3
hsa-miR-1-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501695
Biotype: antisense
Gene id: ENSG00000247199
Gene Name: RP11-373N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-207
0.022
2
6mer
1548-1568
0.003
1
6mer
1117-1138
0.003
2
AC012146.7
hsa-miR-1-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623522
Biotype: TEC
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
865-880
0.026
1
6mer
580-595
0.003
1
RP11-298H24.1
hsa-miR-1-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449761
Biotype: lincRNA
Gene id: ENSG00000229775
Gene Name: RP11-298H24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-108
0.029
2
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