LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
CYP1B1-AS1
hsa-miR-1-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413828
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-188
0.015
1
7mer
1663-1684
0.009
0
6mer
1143-1148
0.006
2
SNHG14
hsa-miR-1-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7273-7300
0.009
0
7mer
6332-6352
0.006
1
7mer
7207-7222
0.006
1
6mer
1230-1249
0.003
2
6mer
1871-1887
0.002
1
6mer
3977-3995
0.002
0
6mer
1472-1495
0.002
1
CTD-2561J22.5
hsa-miR-1-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593653
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-437
0.030
1
RP11-460H9.1
hsa-miR-1-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506917
Biotype: lincRNA
Gene id: ENSG00000249883
Gene Name: RP11-460H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-68
0.030
1
LINC01128
hsa-miR-1-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_047525.1
Biotype: lincRNA
Gene id: NR_047525.1 (gene)
Gene Name: LINC01128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
6414-6433
0.019
1
7mer
5930-5936
0.007
Not Conserved
6mer
1688-1707
0.002
1
6mer
3233-3254
0.001
0
6mer
1711-1727
0.001
1
RP11-706O15.1
hsa-miR-1-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000471090
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-169
0.017
0
6mer
130-154
0.008
1
6mer
403-419
0.004
0
XLOC_006568
hsa-miR-1-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-421
0.026
2
6mer
616-629
0.004
6
XLOC_011061
hsa-miR-1-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022777
Biotype: transcript isomorph
Gene id: XLOC_011061
Gene Name: XLOC_011061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-133
0.021
0
6mer
253-276
0.008
2
LINC00347
hsa-miR-1-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596240
Biotype: lincRNA
Gene id: ENSG00000236678
Gene Name: LINC00347
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-84
0.026
4
6mer
457-479
0.004
Not Conserved
XLOC_001931
hsa-miR-1-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004095
Biotype: transcript isomorph
Gene id: XLOC_001931
Gene Name: XLOC_001931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
174-196
0.014
1
6mer
432-446
0.011
1
7mer
503-528
0.005
Not Conserved
RP11-458K10.2
hsa-miR-1-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000470532
Biotype: lincRNA
Gene id: ENSG00000240973
Gene Name: RP11-458K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-422
0.026
2
6mer
617-630
0.004
6
CTA-292E10.9
hsa-miR-1-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22518-22534
0.013
2
7mer
24460-24465
0.005
Not Conserved
7mer
19243-19263
0.004
0
6mer
11814-11831
0.003
8
6mer
10264-10285
0.002
3
6mer
10798-10814
0.002
2
6mer
23611-23632
0.001
0
XLOC_008910
hsa-miR-1-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00019001
Biotype: transcript isomorph
Gene id: XLOC_008910
Gene Name: XLOC_008910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
109-122
0.017
1
6mer
85-103
0.013
1
RP11-9E17.1
hsa-miR-1-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620414
Biotype: sense_intronic
Gene id: ENSG00000277534
Gene Name: RP11-9E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-270
0.018
1
6mer
2553-2577
0.009
9
6mer
1512-1524
0.002
3
PAXIP1-AS1
hsa-miR-1-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608317
Biotype: lincRNA
Gene id: ENSG00000273344
Gene Name: PAXIP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1396-1419
0.019
1
7mer
1502-1523
0.009
0
6mer
1573-1598
0.002
1
LOC100131289
hsa-miR-1-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038929.1
Biotype: lincRNA
Gene id: NR_038929.1 (gene)
Gene Name: LOC100131289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
611-633
0.030
1
CTD-2561J22.5
hsa-miR-1-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596705
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
418-436
0.030
1
CTA-544A11.1
hsa-miR-1-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4315-4334
0.010
1
7mer
10304-10325
0.010
4
6mer
11303-11317
0.002
2
6mer
4942-4961
0.002
Not Conserved
6mer
9444-9448
0.002
1
6mer
7632-7650
0.001
0
6mer
9820-9844
0.001
0
6mer
4961-4982
0.001
1
6mer
10316-10331
0.000
1
RP11-849H4.4
hsa-miR-1-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3707-3723
0.024
1
7mer
675-692
0.006
2
AC006460.2
hsa-miR-1-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428032
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-124
0.020
1
6mer
171-186
0.005
0
6mer
152-176
0.004
1
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