LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011763
hsa-miR-1-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024442
Biotype: transcript isomorph
Gene id: XLOC_011763
Gene Name: XLOC_011763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-205
0.025
1
7mer
653-672
0.006
0
XLOC_013559
hsa-miR-1-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028212
Biotype: transcript isomorph
Gene id: XLOC_013559
Gene Name: XLOC_013559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1376-1397
0.018
1
8mer
710-736
0.012
Not Conserved
RP11-696N14.1
hsa-miR-1-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500358
Biotype: antisense
Gene id: ENSG00000246090
Gene Name: RP11-696N14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4513-4528
0.014
1
7mer
758-774
0.008
1
7mer
394-413
0.006
1
6mer
2799-2823
0.002
2
CSMD2-AS1
hsa-miR-1-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434181
Biotype: antisense
Gene id: ENSG00000231163
Gene Name: CSMD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-651
0.031
1
XLOC_009473
hsa-miR-1-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019665
Biotype: transcript isomorph
Gene id: XLOC_009473
Gene Name: XLOC_009473
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
771-796
0.017
5
8mer
437-455
0.013
1
LEF1-AS1
hsa-miR-1-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506314
Biotype: retained_intron
Gene id: ENSG00000232021
Gene Name: LEF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-539
0.030
8
RP11-284F21.8
hsa-miR-1-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564032
Biotype: lincRNA
Gene id: ENSG00000260460
Gene Name: RP11-284F21.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-297
0.026
1
6mer
1260-1284
0.005
3
RP11-3P22.1
hsa-miR-1-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413094
Biotype: lincRNA
Gene id: ENSG00000236839
Gene Name: RP11-3P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-109
0.024
2
6mer
208-228
0.006
1
AP000462.1
hsa-miR-1-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543182
Biotype: lincRNA
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-171
0.030
1
XLOC_000308
hsa-miR-1-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001047
Biotype: transcript isomorph
Gene id: XLOC_000308
Gene Name: XLOC_000308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
832-849
0.011
3
6mer
286-299
0.011
7
6mer
796-815
0.008
6
RP11-375I20.6
hsa-miR-1-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568384
Biotype: lincRNA
Gene id: ENSG00000260633
Gene Name: RP11-375I20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-637
0.030
3
NUTM2A-AS1
hsa-miR-1-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446751
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-232
0.027
0
6mer
1048-1064
0.003
0
AP002856.5
hsa-miR-1-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000606885
Biotype: lincRNA
Gene id: ENSG00000231698
Gene Name: AP002856.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-266
0.015
2
7mer
444-457
0.015
1
XLOC_001199
hsa-miR-1-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-426
0.011
0
7mer
421-438
0.010
1
7mer
2163-2179
0.004
3
6mer
1162-1177
0.002
1
6mer
1961-1981
0.001
Not Conserved
6mer
4049-4064
0.001
1
XLOC_013385
hsa-miR-1-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026820
Biotype: transcript isomorph
Gene id: XLOC_013385
Gene Name: XLOC_013385
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2033-2047
0.012
1
6mer
2299-2309
0.005
Not Conserved
6mer
2223-2234
0.004
0
6mer
397-416
0.004
1
6mer
1536-1554
0.003
1
6mer
1220-1224
0.002
1
CTD-2561J22.5
hsa-miR-1-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599993
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
817-835
0.030
1
RP11-96B5.4
hsa-miR-1-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561565
Biotype: lincRNA
Gene id: ENSG00000261368
Gene Name: RP11-96B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-723
0.030
1
AP000469.2
hsa-miR-1-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416218
Biotype: lincRNA
Gene id: ENSG00000224832
Gene Name: AP000469.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1677-1702
0.030
1
CTD-2561J22.5
hsa-miR-1-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
717-735
0.030
1
CTD-2561J22.5
hsa-miR-1-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597444
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-730
0.030
1
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