LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
LINC01004
hsa-miR-1-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8074-8086
0.019
4
7mer
5561-5578
0.004
2
6mer
8267-8282
0.003
1
6mer
4470-4482
0.003
3
6mer
1826-1852
0.002
1
6mer
4341-4345
0.001
3
RP5-864K19.4
hsa-miR-1-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456813
Biotype: antisense
Gene id: ENSG00000228436
Gene Name: RP5-864K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-182
0.026
7
6mer
287-305
0.005
5
RP11-121C2.2
hsa-miR-1-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563286
Biotype: lincRNA
Gene id: ENSG00000259959
Gene Name: RP11-121C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
410-429
0.031
0
RP11-438B23.2
hsa-miR-1-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6773-6794
0.022
0
6mer
6800-6814
0.009
4
RP11-187E13.1
hsa-miR-1-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553330
Biotype: lincRNA
Gene id: ENSG00000258474
Gene Name: RP11-187E13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
425-444
0.031
5
LINC-PINT
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435523
Biotype: antisense
Gene id: ENSG00000231721
Gene Name: LINC-PINT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-517
0.019
0
8mer
471-488
0.012
1
RP11-404I7.1
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511916
Biotype: lincRNA
Gene id: ENSG00000249513
Gene Name: RP11-404I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-198
0.031
8
XLOC_005664
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012134
Biotype: transcript isomorph
Gene id: XLOC_005664
Gene Name: XLOC_005664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-43
0.031
1
RP5-1182A14.5
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607700
Biotype: lincRNA
Gene id: ENSG00000271732
Gene Name: RP5-1182A14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-335
0.026
Not Conserved
6mer
313-330
0.005
Not Conserved
LINC00152
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024204.1
Biotype: lincRNA
Gene id: NR_024204.1 (gene)
Gene Name: LINC00152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-107
0.016
0
8mer
462-480
0.014
0
RP11-815J4.1
hsa-miR-1-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591853
Biotype: lincRNA
Gene id: ENSG00000267722
Gene Name: RP11-815J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-143
0.031
1
TAPT1-AS1
hsa-miR-1-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570786
Biotype: antisense
Gene id: ENSG00000263327
Gene Name: TAPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-60
0.021
0
6mer
990-1004
0.004
2
6mer
1155-1180
0.003
1
6mer
685-711
0.003
1
AP000462.1
hsa-miR-1-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539685
Biotype: antisense
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-110
0.031
1
XLOC_006415
hsa-miR-1-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013782
Biotype: transcript isomorph
Gene id: XLOC_006415
Gene Name: XLOC_006415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1307-1319
0.015
0
7mer
151-169
0.010
1
6mer
542-552
0.006
3
LINC00861
hsa-miR-1-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500989
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-519
0.029
2
6mer
977-1000
0.002
0
RP11-526P5.2
hsa-miR-1-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438753
Biotype: lincRNA
Gene id: ENSG00000235281
Gene Name: RP11-526P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-662
0.031
4
RP11-27K13.3
hsa-miR-1-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445523
Biotype: antisense
Gene id: ENSG00000236137
Gene Name: RP11-27K13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1482-1497
0.020
0
8mer
313-327
0.011
1
XLOC_004339
hsa-miR-1-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010663
Biotype: transcript isomorph
Gene id: XLOC_004339
Gene Name: XLOC_004339
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.018
2
6mer
2025-2038
0.008
5
6mer
1697-1722
0.003
1
6mer
1002-1018
0.002
0
XLOC_013601
hsa-miR-1-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-607
0.007
1
8mer
2286-2304
0.005
0
7mer
2940-2961
0.003
0
6mer
4513-4517
0.003
3
7mer
9114-9119
0.003
1
7mer
9122-9134
0.002
1
6mer
9031-9039
0.002
1
6mer
6163-6182
0.002
2
6mer
3439-3444
0.002
1
6mer
1990-2006
0.002
1
6mer
4912-4931
0.001
0
RP11-706O15.1
hsa-miR-1-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000461011
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-176
0.017
0
6mer
137-161
0.008
1
6mer
363-379
0.006
0
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