LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
TUG1
hsa-miR-1-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000521091
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-612
0.018
6
7mer
1471-1495
0.011
1
6mer
1156-1175
0.003
5
LINC00691
hsa-miR-1-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432505
Biotype: lincRNA
Gene id: ENSG00000224074
Gene Name: LINC00691
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1698-1715
0.017
0
7mer
885-910
0.010
1
6mer
1794-1814
0.005
1
RP11-525J21.1
hsa-miR-1-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511603
Biotype: lincRNA
Gene id: ENSG00000249892
Gene Name: RP11-525J21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-362
0.019
Not Conserved
7mer
569-593
0.013
0
VWA8-AS1
hsa-miR-1-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000611103
Biotype: antisense
Gene id: ENSG00000278338
Gene Name: VWA8-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
684-696
0.032
2
RP11-673E11.2
hsa-miR-1-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567082
Biotype: lincRNA
Gene id: ENSG00000261257
Gene Name: RP11-673E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-430
0.032
8
RP1-137K24.1
hsa-miR-1-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511443
Biotype: lincRNA
Gene id: ENSG00000248486
Gene Name: RP1-137K24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-453
0.028
1
6mer
13-32
0.003
1
RP11-75N4.2
hsa-miR-1-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579251
Biotype: antisense
Gene id: ENSG00000264859
Gene Name: RP11-75N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-56
0.022
1
7mer
652-665
0.010
1
MIR1255B1
hsa-miR-1-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454066
Biotype: antisense
Gene id: ENSG00000223770
Gene Name: MIR1255B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
773-790
0.031
1
AC006126.3
hsa-miR-1-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591569
Biotype: antisense
Gene id: ENSG00000266958
Gene Name: AC006126.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-458
0.031
1
TPT1-AS1
hsa-miR-1-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618947
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-348
0.031
0
LINC00454
hsa-miR-1-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608044
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-696
0.027
5
6mer
281-302
0.004
1
RP11-680F20.10
hsa-miR-1-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569238
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
808-822
0.031
0
XLOC_000986
hsa-miR-1-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001648
Biotype: transcript isomorph
Gene id: XLOC_000986
Gene Name: XLOC_000986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1105-1116
0.014
4
7mer
1100-1116
0.006
3
6mer
393-419
0.006
4
6mer
1491-1509
0.004
3
6mer
1118-1130
0.002
1
LINC01278
hsa-miR-1-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608623
Biotype: retained_intron
Gene id: ENSG00000235437
Gene Name: LINC01278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
242-268
0.012
1
7mer
2493-2507
0.007
Not Conserved
8mer
3356-3379
0.004
Not Conserved
6mer
4444-4462
0.003
Not Conserved
6mer
3806-3822
0.002
Not Conserved
6mer
3405-3426
0.001
Not Conserved
6mer
1934-1958
0.001
Not Conserved
6mer
2392-2412
0.001
Not Conserved
XLOC_007508
hsa-miR-1-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016123
Biotype: transcript isomorph
Gene id: XLOC_007508
Gene Name: XLOC_007508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-699
0.017
0
6mer
198-215
0.015
9
XLOC_002595
hsa-miR-1-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005498
Biotype: transcript isomorph
Gene id: XLOC_002595
Gene Name: XLOC_002595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2188-2211
0.024
0
6mer
356-381
0.004
2
6mer
1865-1891
0.003
1
RP11-5L12.1
hsa-miR-1-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528520
Biotype: sense_intronic
Gene id: ENSG00000255097
Gene Name: RP11-5L12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-287
0.031
1
CTA-992D9.8
hsa-miR-1-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623947
Biotype: lincRNA
Gene id: ENSG00000280025
Gene Name: CTA-992D9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3662-3684
0.015
1
7mer
532-559
0.010
3
6mer
4183-4203
0.006
3
XLOC_003440
hsa-miR-1-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3179-3195
0.026
1
6mer
2548-2564
0.006
1
XLOC_001333
hsa-miR-1-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004690
Biotype: transcript isomorph
Gene id: XLOC_001333
Gene Name: XLOC_001333
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2789-2807
0.021
1
7mer
578-594
0.008
0
6mer
2064-2084
0.002
1
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