LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-392E22.12
hsa-miR-1-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562942
Biotype: processed_transcript
Gene id: ENSG00000273036
Gene Name: RP11-392E22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-266
0.032
0
RP11-452C8.1
hsa-miR-1-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506460
Biotype: lincRNA
Gene id: ENSG00000248408
Gene Name: RP11-452C8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-467
0.025
1
6mer
286-306
0.007
1
RP11-314B1.2
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4753-4768
0.026
8
7mer
2614-2633
0.006
1
RP5-965G21.4
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1739-1762
0.017
2
7mer
2092-2107
0.011
0
6mer
1715-1719
0.003
1
FTO-IT1
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563011
Biotype: sense_intronic
Gene id: ENSG00000260936
Gene Name: FTO-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
966-988
0.032
2
RP11-114H20.1
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-612
0.024
1
6mer
1679-1702
0.005
1
6mer
1225-1242
0.002
1
RP11-334C17.6
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000619415
Biotype: lincRNA
Gene id: ENSG00000275479
Gene Name: RP11-334C17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-104
0.032
1
ADIRF-AS1
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609170
Biotype: retained_intron
Gene id: ENSG00000272734
Gene Name: ADIRF-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2137-2156
0.021
1
6mer
402-425
0.006
1
6mer
283-287
0.005
1
XLOC_001515
hsa-miR-1-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002929
Biotype: transcript isomorph
Gene id: XLOC_001515
Gene Name: XLOC_001515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-463
0.023
3
6mer
785-805
0.004
3
6mer
1398-1414
0.004
2
RP11-945F5.1
hsa-miR-1-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554319
Biotype: lincRNA
Gene id: ENSG00000258845
Gene Name: RP11-945F5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-635
0.032
0
XLOC_009818
hsa-miR-1-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020191
Biotype: transcript isomorph
Gene id: XLOC_009818
Gene Name: XLOC_009818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
979-1000
0.017
1
6mer
876-892
0.007
6
6mer
113-131
0.005
0
6mer
1069-1093
0.003
0
XLOC_010860
hsa-miR-1-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022543
Biotype: transcript isomorph
Gene id: XLOC_010860
Gene Name: XLOC_010860
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-611
0.032
1
AC003665.1
hsa-miR-1-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000451140
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
746-753
0.021
3
7mer
429-443
0.011
0
RP1-290I10.5
hsa-miR-1-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431401
Biotype: lincRNA
Gene id: ENSG00000231056
Gene Name: RP1-290I10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
187-209
0.032
0
RP11-960L18.1
hsa-miR-1-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569731
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-283
0.024
1
7mer
326-340
0.008
0
RP11-451G4.3
hsa-miR-1-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470024
Biotype: lincRNA
Gene id: ENSG00000242790
Gene Name: RP11-451G4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-243
0.026
1
6mer
310-326
0.006
5
CD27-AS1
hsa-miR-1-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545339
Biotype: antisense
Gene id: ENSG00000215039
Gene Name: CD27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1635-1641
0.032
2
SNRK-AS1
hsa-miR-1-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000422681
Biotype: antisense
Gene id: ENSG00000234617
Gene Name: SNRK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-588
0.032
2
CTA-747E2.10
hsa-miR-1-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456740
Biotype: antisense
Gene id: ENSG00000226772
Gene Name: CTA-747E2.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-267
0.025
2
6mer
91-113
0.007
1
XLOC_010704
hsa-miR-1-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022093
Biotype: transcript isomorph
Gene id: XLOC_010704
Gene Name: XLOC_010704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-272
0.032
0
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