LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-161M6.3
hsa-miR-1-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565401
Biotype: lincRNA
Gene id: ENSG00000260496
Gene Name: RP11-161M6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-203
0.019
0
8mer
307-324
0.014
1
XLOC_007058
hsa-miR-1-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014979
Biotype: transcript isomorph
Gene id: XLOC_007058
Gene Name: XLOC_007058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-253
0.033
1
AC004906.3
hsa-miR-1-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000423194
Biotype: antisense
Gene id: ENSG00000237286
Gene Name: AC004906.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-559
0.027
Not Conserved
6mer
38-42
0.005
1
RP11-82O19.1
hsa-miR-1-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577846
Biotype: antisense
Gene id: ENSG00000263657
Gene Name: RP11-82O19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-333
0.033
1
TMEM44-AS1
hsa-miR-1-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453671
Biotype: antisense
Gene id: ENSG00000231770
Gene Name: TMEM44-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
951-976
0.032
0
XLOC_005820
hsa-miR-1-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012264
Biotype: transcript isomorph
Gene id: XLOC_005820
Gene Name: XLOC_005820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-197
0.032
1
RP11-783L4.1
hsa-miR-1-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556291
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-549
0.029
3
6mer
317-323
0.004
1
RP11-205M3.3
hsa-miR-1-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508313
Biotype: lincRNA
Gene id: ENSG00000248319
Gene Name: RP11-205M3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
754-771
0.010
3
8mer
2849-2863
0.008
2
7mer
3713-3735
0.005
0
6mer
536-546
0.003
1
6mer
3718-3741
0.002
0
6mer
1120-1141
0.002
1
6mer
1107-1130
0.001
0
6mer
2839-2863
0.001
0
RP11-16N11.2
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566372
Biotype: antisense
Gene id: ENSG00000260572
Gene Name: RP11-16N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-255
0.018
Not Conserved
6mer
269-273
0.007
4
6mer
313-336
0.005
3
6mer
920-946
0.003
1
GNG12-AS1
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413628
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-276
0.032
0
RP11-960L18.1
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565272
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-474
0.024
1
7mer
517-531
0.008
0
RP11-428G2.1
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428346
Biotype: lincRNA
Gene id: ENSG00000235356
Gene Name: RP11-428G2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-286
0.032
1
LINC00939
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000507313
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2468-2484
0.032
1
HNRNPUL2-BSCL2
hsa-miR-1-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-96
0.032
6
LINC00836
hsa-miR-1-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108067.1
Biotype: lincRNA
Gene id: NR_108067.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1388-1404
0.029
0
6mer
936-952
0.003
0
MIR4435-1HG
hsa-miR-1-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439494
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-124
0.016
0
8mer
171-189
0.016
0
XLOC_009604
hsa-miR-1-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020154
Biotype: transcript isomorph
Gene id: XLOC_009604
Gene Name: XLOC_009604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-83
0.032
6
RRM1-AS1
hsa-miR-1-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529323
Biotype: antisense
Gene id: ENSG00000255276
Gene Name: RRM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-219
0.018
1
8mer
226-245
0.014
0
XLOC_011334
hsa-miR-1-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023268
Biotype: transcript isomorph
Gene id: XLOC_011334
Gene Name: XLOC_011334
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
381-388
0.029
0
6mer
2058-2081
0.003
1
RP11-342K6.2
hsa-miR-1-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604219
Biotype: sense_intronic
Gene id: ENSG00000271452
Gene Name: RP11-342K6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-274
0.032
8
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