LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
AC005083.1
hsa-miR-1-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439446
Biotype: retained_intron
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-667
0.033
1
XLOC_003449
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007979
Biotype: transcript isomorph
Gene id: XLOC_003449
Gene Name: XLOC_003449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-69
0.029
0
6mer
445-449
0.004
1
MALAT1
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000618132
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-568
0.033
1
XLOC_003861
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-117
0.033
1
RP11-495P10.5
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427169
Biotype: lincRNA
Gene id: ENSG00000238107
Gene Name: RP11-495P10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1084-1101
0.023
1
6mer
725-744
0.004
0
7mer
916-933
0.004
0
6mer
783-801
0.002
0
DCTN1-AS1
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024463.1
Biotype: antisense
Gene id: NR_024463.1 (gene)
Gene Name: DCTN1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1748
0.033
2
AC003665.1
hsa-miR-1-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_103857.1
Biotype: antisense
Gene id: NR_103857.1 (gene)
Gene Name: AC003665.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
634-641
0.021
3
7mer
317-331
0.012
0
LINC00967
hsa-miR-1-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517689
Biotype: lincRNA
Gene id: ENSG00000253138
Gene Name: LINC00967
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-285
0.033
2
CECR7
hsa-miR-1-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2213-2230
0.021
Not Conserved
6mer
559-573
0.005
1
6mer
1171-1182
0.004
1
6mer
1468-1481
0.003
0
LINC00638
hsa-miR-1-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1488-1514
0.025
1
6mer
1053-1058
0.008
1
RP11-310E22.5
hsa-miR-1-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422744
Biotype: lincRNA
Gene id: ENSG00000231829
Gene Name: RP11-310E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-121
0.021
1
6mer
84-102
0.012
1
RP11-493P1.2
hsa-miR-1-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549725
Biotype: antisense
Gene id: ENSG00000258034
Gene Name: RP11-493P1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
270-287
0.028
0
6mer
296-321
0.005
0
RP11-331F9.3
hsa-miR-1-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457044
Biotype: antisense
Gene id: ENSG00000231393
Gene Name: RP11-331F9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-625
0.033
3
TMEM44-AS1
hsa-miR-1-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419571
Biotype: antisense
Gene id: ENSG00000231770
Gene Name: TMEM44-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-531
0.033
0
TMEM44-AS1
hsa-miR-1-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447982
Biotype: antisense
Gene id: ENSG00000231770
Gene Name: TMEM44-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-801
0.033
0
CTD-3187F8.11
hsa-miR-1-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595566
Biotype: lincRNA
Gene id: ENSG00000268318
Gene Name: CTD-3187F8.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-426
0.028
0
6mer
122-145
0.005
3
XLOC_013911
hsa-miR-1-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028993
Biotype: transcript isomorph
Gene id: XLOC_013911
Gene Name: XLOC_013911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-145
0.033
1
DCTN1-AS1
hsa-miR-1-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437991
Biotype: antisense
Gene id: ENSG00000237737
Gene Name: DCTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1748
0.033
2
RP11-960L18.1
hsa-miR-1-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568131
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-200
0.024
1
7mer
243-257
0.009
0
KIZ-AS1
hsa-miR-1-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443753
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
767-786
0.033
5
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