LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP3-438O4.4
hsa-miR-1-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000432360
Biotype: antisense
Gene id: ENSG00000225676
Gene Name: RP3-438O4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-260
0.031
1
6mer
147-168
0.004
0
LINC00538
hsa-miR-1-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046189.1
Biotype: lincRNA
Gene id: NR_046189.1 (gene)
Gene Name: LINC00538
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
37-59
0.030
1
6mer
1271-1287
0.004
5
TSIX
hsa-miR-1-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18962-18979
0.008
0
7mer
30454-30475
0.006
1
6mer
32649-32659
0.003
3
7mer
9608-9619
0.003
1
6mer
31749-31753
0.002
1
6mer
28862-28881
0.002
2
6mer
6112-6128
0.002
1
6mer
26287-26300
0.002
1
6mer
9059-9068
0.002
0
6mer
4310-4325
0.002
1
6mer
14121-14135
0.001
Not Conserved
6mer
9056-9080
0.001
1
SRP14-AS1
hsa-miR-1-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559012
Biotype: lincRNA
Gene id: ENSG00000248508
Gene Name: SRP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-169
0.035
1
RP11-575F12.3
hsa-miR-1-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617117
Biotype: lincRNA
Gene id: ENSG00000278266
Gene Name: RP11-575F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2838-2861
0.019
0
7mer
2544-2557
0.016
1
LINC00967
hsa-miR-1-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517725
Biotype: lincRNA
Gene id: ENSG00000253138
Gene Name: LINC00967
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-245
0.034
2
RP11-463J10.3
hsa-miR-1-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553603
Biotype: antisense
Gene id: ENSG00000259007
Gene Name: RP11-463J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-70
0.034
5
AC002465.2
hsa-miR-1-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436097
Biotype: antisense
Gene id: ENSG00000238202
Gene Name: AC002465.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-303
0.034
1
DICER1-AS1
hsa-miR-1-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000439999
Biotype: antisense
Gene id: ENSG00000235706
Gene Name: DICER1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
904-919
0.021
0
8mer
1437-1443
0.009
0
6mer
1475-1498
0.002
0
6mer
1451-1465
0.002
1
6mer
953-970
0.001
0
RP11-73G16.1
hsa-miR-1-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504207
Biotype: retained_intron
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-152
0.034
4
AC098617.1
hsa-miR-1-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602099
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19-41
0.034
1
RP11-576I22.2
hsa-miR-1-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-182
0.034
8
CTB-109A12.1
hsa-miR-1-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509655
Biotype: sense_overlapping
Gene id: ENSG00000251405
Gene Name: CTB-109A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1661-1667
0.022
1
8mer
1380-1397
0.012
1
AC073130.1
hsa-miR-1-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457033
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-192
0.018
1
8mer
349-355
0.016
1
DHRS4-AS1
hsa-miR-1-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555045
Biotype: antisense
Gene id: ENSG00000215256
Gene Name: DHRS4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-282
0.025
1
6mer
1602-1621
0.004
1
6mer
1321-1347
0.004
2
6mer
1297-1320
0.002
0
RP11-268G13.1
hsa-miR-1-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569833
Biotype: lincRNA
Gene id: ENSG00000261411
Gene Name: RP11-268G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-132
0.034
1
CD27-AS1
hsa-miR-1-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000399492
Biotype: antisense
Gene id: ENSG00000215039
Gene Name: CD27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1028-1034
0.034
2
RP11-134D3.1
hsa-miR-1-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000430050
Biotype: lincRNA
Gene id: ENSG00000232190
Gene Name: RP11-134D3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4064-4078
0.030
2
6mer
3531-3548
0.003
1
6mer
1154-1175
0.001
1
XLOC_009714
hsa-miR-1-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021104
Biotype: transcript isomorph
Gene id: XLOC_009714
Gene Name: XLOC_009714
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
461-488
0.034
0
CTB-4E7.1
hsa-miR-1-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519375
Biotype: antisense
Gene id: ENSG00000253980
Gene Name: CTB-4E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-538
0.027
1
6mer
322-338
0.007
3
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