LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
LINC00887
hsa-miR-1-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456816
Biotype: lincRNA
Gene id: ENSG00000214145
Gene Name: LINC00887
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-113
0.096
7
6mer
91-101
0.012
5
7mer
215-233
0.009
3
RP11-434D9.1
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509947
Biotype: retained_intron
Gene id: ENSG00000249364
Gene Name: RP11-434D9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-709
0.094
8
7mer
695-714
0.022
6
RP11-586K12.10
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2143-2149
0.103
0
6mer
1803-1824
0.012
0
RP11-649E7.5
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555043
Biotype: antisense
Gene id: ENSG00000258377
Gene Name: RP11-649E7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2191-2216
0.098
6
8mer
572-592
0.015
3
6mer
1231-1248
0.001
0
SNORD116-20
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567527
Biotype: lincRNA
Gene id: ENSG00000261069
Gene Name: SNORD116-20
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1150-1173
0.069
2
8mer
8-31
0.044
1
KCNQ1OT1
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29346-29363
0.010
0
7mer
65831-65847
0.008
6
8mer
27492-27516
0.008
0
7mer
49012-49026
0.006
1
7mer
71281-71300
0.005
1
7mer
44177-44196
0.005
5
7mer
43484-43506
0.004
1
7mer
8495-8511
0.004
1
7mer
81115-81140
0.004
1
7mer
16972-16987
0.004
1
7mer
79368-79373
0.003
1
7mer
76850-76875
0.003
1
6mer
45729-45733
0.003
4
6mer
197-212
0.003
0
6mer
86731-86758
0.002
2
7mer
37669-37674
0.002
0
6mer
23409-23414
0.002
1
6mer
27948-27960
0.002
0
6mer
7527-7542
0.002
1
6mer
42404-42422
0.002
1
6mer
2327-2332
0.002
0
6mer
49964-49989
0.002
1
6mer
15569-15587
0.002
1
6mer
6838-6851
0.002
0
6mer
75096-75118
0.002
4
6mer
59738-59757
0.002
1
6mer
80685-80708
0.002
1
6mer
61663-61683
0.002
1
6mer
5116-5133
0.002
1
6mer
84751-84755
0.002
1
6mer
51468-51495
0.002
1
6mer
15182-15199
0.002
0
6mer
74827-74848
0.002
0
6mer
36468-36494
0.001
0
6mer
1602-1621
0.001
0
6mer
42042-42062
0.001
0
6mer
36239-36263
0.001
0
6mer
38565-38589
0.001
0
6mer
57669-57681
0.001
0
6mer
29293-29313
0.001
0
RP11-180P8.3
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-660
0.091
8
7mer
239-262
0.011
3
6mer
162-187
0.009
6
RP11-1437A8.4
hsa-miR-1-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-344
0.098
0
6mer
663-684
0.011
0
RP11-586K12.10
hsa-miR-1-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570084
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-170
0.108
0
RP11-1437A8.4
hsa-miR-1-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565847
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-263
0.108
0
AC006548.28
hsa-miR-1-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34266-34284
0.015
1
8mer
49602-49608
0.007
Not Conserved
7mer
56301-56317
0.006
0
8mer
48196-48214
0.006
Not Conserved
7mer
23494-23515
0.004
3
7mer
1659-1683
0.004
1
8mer
32911-32929
0.004
0
7mer
37115-37126
0.004
0
6mer
84020-84038
0.003
1
7mer
64202-64208
0.003
0
7mer
9639-9644
0.003
1
6mer
40179-40200
0.002
2
6mer
16333-16341
0.002
1
7mer
25055-25078
0.002
1
7mer
7474-7500
0.002
0
6mer
8780-8807
0.002
0
6mer
79843-79855
0.002
0
6mer
46188-46214
0.002
Not Conserved
6mer
67275-67287
0.002
0
6mer
57029-57050
0.002
0
6mer
30726-30750
0.002
1
6mer
31658-31663
0.002
1
6mer
48651-48663
0.002
Not Conserved
6mer
70300-70320
0.001
0
6mer
43212-43216
0.001
1
6mer
7519-7524
0.001
1
6mer
35016-35036
0.001
0
6mer
59568-59586
0.001
1
6mer
69152-69177
0.001
0
6mer
60626-60640
0.001
1
6mer
62390-62403
0.001
1
6mer
45165-45192
0.001
1
6mer
71739-71753
0.001
Not Conserved
6mer
35532-35548
0.001
0
6mer
48381-48401
0.001
Not Conserved
6mer
17726-17733
0.001
1
6mer
49992-50007
0.001
Not Conserved
6mer
70083-70102
0.001
0
6mer
75318-75338
0.001
0
6mer
57648-57655
0.001
0
6mer
59944-59955
0.001
0
6mer
34242-34256
0.001
0
6mer
32871-32891
0.001
0
CTC-436K13.5
hsa-miR-1-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522769
Biotype: lincRNA
Gene id: ENSG00000253792
Gene Name: CTC-436K13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-234
0.098
8
RP11-24M17.4
hsa-miR-1-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623240
Biotype: TEC
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
871-888
0.097
0
XLOC_008374
hsa-miR-1-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017700
Biotype: transcript isomorph
Gene id: XLOC_008374
Gene Name: XLOC_008374
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3003-3021
0.032
0
8mer
3121-3135
0.027
Not Conserved
8mer
3081-3097
0.018
0
8mer
2851-2857
0.011
Not Conserved
6mer
1450-1463
0.003
5
6mer
2608-2612
0.002
Not Conserved
XLOC_004983
hsa-miR-1-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010462
Biotype: transcript isomorph
Gene id: XLOC_004983
Gene Name: XLOC_004983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-155
0.093
4
RP11-244B22.6
hsa-miR-1-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1214-1220
0.073
0
6mer
1081-1090
0.010
0
6mer
896-900
0.009
0
NR2F1-AS1
hsa-miR-1-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606696
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
335-360
0.085
1
6mer
2660-2671
0.005
1
AC002480.3
hsa-miR-1-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435127
Biotype: antisense
Gene id: ENSG00000232759
Gene Name: AC002480.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1519-1540
0.073
7
7mer
1343-1362
0.009
1
6mer
519-525
0.003
Not Conserved
6mer
1876-1898
0.003
1
6mer
1646-1658
0.002
Not Conserved
LINC00707
hsa-miR-1-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436383
Biotype: lincRNA
Gene id: ENSG00000238266
Gene Name: LINC00707
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2800-2818
0.030
0
8mer
2918-2932
0.027
Not Conserved
8mer
2878-2894
0.018
0
8mer
2648-2654
0.010
Not Conserved
6mer
1247-1260
0.003
5
6mer
2405-2409
0.002
Not Conserved
NR2F1-AS1
hsa-miR-1-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504474
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
335-360
0.084
1
6mer
2773-2784
0.005
1
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