LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006786
hsa-miR-1-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-49
0.036
0
RP11-61I13.3
hsa-miR-1-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
469-490
0.028
11
7mer
2539-2561
0.003
1
8mer
1330-1352
0.003
0
6mer
1415-1433
0.001
1
RP11-16C1.3
hsa-miR-1-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585081
Biotype: antisense
Gene id: ENSG00000265987
Gene Name: RP11-16C1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-388
0.036
0
XLOC_000294
hsa-miR-1-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5841-5866
0.022
1
7mer
5698-5713
0.006
Not Conserved
7mer
7076-7095
0.004
1
6mer
1138-1164
0.002
1
6mer
8306-8322
0.002
0
XLOC_002882
hsa-miR-1-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006281
Biotype: transcript isomorph
Gene id: XLOC_002882
Gene Name: XLOC_002882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6483-6501
0.033
1
6mer
6294-6314
0.003
0
XLOC_006277
hsa-miR-1-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013611
Biotype: transcript isomorph
Gene id: XLOC_006277
Gene Name: XLOC_006277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-37
0.029
1
6mer
507-527
0.005
9
6mer
481-507
0.003
1
FAM87A
hsa-miR-1-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
425-446
0.015
1
6mer
28-46
0.006
1
6mer
3986-4010
0.006
1
7mer
705-710
0.005
0
6mer
3511-3528
0.004
1
XLOC_011368
hsa-miR-1-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023532
Biotype: transcript isomorph
Gene id: XLOC_011368
Gene Name: XLOC_011368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1631-1648
0.036
11
AC018799.1
hsa-miR-1-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438505
Biotype: lincRNA
Gene id: ENSG00000225539
Gene Name: AC018799.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-359
0.036
1
XLOC_000918
hsa-miR-1-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4435-4457
0.011
1
8mer
2634-2650
0.008
3
7mer
4197-4221
0.006
1
6mer
4602-4624
0.006
1
6mer
811-832
0.004
1
6mer
3502-3523
0.002
4
RP13-143G15.4
hsa-miR-1-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585946
Biotype: antisense
Gene id: ENSG00000237596
Gene Name: RP13-143G15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-357
0.016
3
7mer
139-160
0.014
4
6mer
598-615
0.005
4
RP11-216M21.7
hsa-miR-1-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2388-2413
0.025
0
6mer
952-973
0.011
0
NUTM2A-AS1
hsa-miR-1-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417860
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-50
0.036
0
XLOC_003323
hsa-miR-1-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005403
Biotype: transcript isomorph
Gene id: XLOC_003323
Gene Name: XLOC_003323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1360-1379
0.033
1
6mer
1192-1212
0.003
1
XLOC_010154
hsa-miR-1-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020872
Biotype: transcript isomorph
Gene id: XLOC_010154
Gene Name: XLOC_010154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-313
0.018
0
7mer
2051-2074
0.014
5
6mer
1228-1233
0.004
5
RP5-1014D13.2
hsa-miR-1-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8075-8092
0.013
1
7mer
19115-19137
0.012
7
8mer+wobble
11707-11723
0.004
2
6mer
19362-19374
0.003
1
7mer
6123-6129
0.002
0
6mer
17113-17127
0.002
3
XLOC_003640
hsa-miR-1-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008192
Biotype: transcript isomorph
Gene id: XLOC_003640
Gene Name: XLOC_003640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1016-1040
0.028
0
6mer
600-615
0.004
0
6mer
1021-1046
0.004
1
RP11-379K17.4
hsa-miR-1-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469301
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1361-1380
0.033
1
6mer
1193-1213
0.003
1
XLOC_003450
hsa-miR-1-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007980
Biotype: transcript isomorph
Gene id: XLOC_003450
Gene Name: XLOC_003450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-295
0.035
0
AC007003.1
hsa-miR-1-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439318
Biotype: sense_intronic
Gene id: ENSG00000231183
Gene Name: AC007003.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-133
0.028
6
6mer
89-105
0.008
5
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