LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-49K24.8
hsa-miR-1-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591183
Biotype: antisense
Gene id: ENSG00000267724
Gene Name: RP11-49K24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-483
0.037
1
RP11-706O15.5
hsa-miR-1-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424415
Biotype: lincRNA
Gene id: ENSG00000205663
Gene Name: RP11-706O15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1836
0.030
1
6mer
1967-1985
0.004
0
6mer
1797-1821
0.003
1
RP11-6N13.1
hsa-miR-1-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518276
Biotype: lincRNA
Gene id: ENSG00000251574
Gene Name: RP11-6N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
83-100
0.037
0
TUG1
hsa-miR-1-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000602971
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-97
0.022
6
7mer
942-966
0.011
1
6mer
641-660
0.004
5
RP1-149A16.17
hsa-miR-1-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444848
Biotype: lincRNA
Gene id: ENSG00000241954
Gene Name: RP1-149A16.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-305
0.037
1
RP4-717I23.3
hsa-miR-1-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421202
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2869-2880
0.012
1
8mer
1150-1166
0.010
3
7mer
2631-2655
0.007
1
6mer
2907-2929
0.005
1
6mer
2018-2039
0.003
4
MTUS2-AS2
hsa-miR-1-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434779
Biotype: antisense
Gene id: ENSG00000236758
Gene Name: MTUS2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-188
0.037
1
XLOC_002258
hsa-miR-1-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-183
0.019
0
6mer
2583-2600
0.013
1
6mer
1128-1148
0.005
1
LINC00649
hsa-miR-1-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8758-8783
0.013
0
9mer
7454-7475
0.006
0
8mer
5535-5555
0.004
1
6mer
8286-8300
0.004
4
7mer
5776-5799
0.003
0
6mer
3089-3093
0.002
3
6mer
5959-5976
0.002
1
6mer
5035-5052
0.002
1
6mer
1336-1362
0.001
2
LINC00967
hsa-miR-1-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518412
Biotype: lincRNA
Gene id: ENSG00000253138
Gene Name: LINC00967
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-267
0.037
2
RP3-462E2.5
hsa-miR-1-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602695
Biotype: lincRNA
Gene id: ENSG00000270018
Gene Name: RP3-462E2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-488
0.037
1
DDX26B-AS1
hsa-miR-1-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430820
Biotype: antisense
Gene id: ENSG00000225235
Gene Name: DDX26B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-70
0.025
5
7mer
110-123
0.012
1
RP11-244G12.1
hsa-miR-1-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000614959
Biotype: lincRNA
Gene id: ENSG00000277797
Gene Name: RP11-244G12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1907-1931
0.018
0
8mer+wobble
513-533
0.010
0
8mer+mismatch
2168-2188
0.008
2
XLOC_007087
hsa-miR-1-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015010
Biotype: transcript isomorph
Gene id: XLOC_007087
Gene Name: XLOC_007087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1305-1327
0.012
Not Conserved
7mer
941-964
0.011
2
6mer
144-168
0.005
0
6mer
4697-4711
0.003
1
6mer
2204-2208
0.003
2
6mer
4172-4192
0.002
Not Conserved
CTA-929C8.9
hsa-miR-1-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14223-14243
0.018
1
7mer
5692-5708
0.005
1
7mer
11912-11922
0.003
0
6mer
19165-19188
0.002
2
6mer
17363-17378
0.002
1
6mer
2261-2276
0.002
1
6mer
12504-12526
0.002
1
6mer
13704-13717
0.002
1
6mer
1958-1978
0.001
0
XLOC_012018
hsa-miR-1-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024738
Biotype: transcript isomorph
Gene id: XLOC_012018
Gene Name: XLOC_012018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-314
0.037
0
XLOC_010445
hsa-miR-1-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3858-3876
0.018
1
8mer+wobble
600-621
0.008
1
7mer
688-698
0.005
0
7mer
3508-3532
0.005
1
COX10-AS1
hsa-miR-1-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000449363
Biotype: antisense
Gene id: ENSG00000236088
Gene Name: COX10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1663-1680
0.024
0
7mer
1430-1446
0.009
0
6mer
1419-1436
0.003
2
RP11-507K2.3
hsa-miR-1-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556328
Biotype: antisense
Gene id: ENSG00000258789
Gene Name: RP11-507K2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-577
0.027
5
6mer
550-572
0.006
2
6mer
419-423
0.004
1
RP11-363G10.2
hsa-miR-1-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1758-1780
0.028
1
6mer
668-691
0.005
1
6mer
1128-1145
0.003
1
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