LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
LL22NC03-22D1.1
hsa-miR-1-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18769-18794
0.008
2
7mer
16041-16056
0.007
2
7mer
2615-2635
0.004
1
7mer
13261-13287
0.004
0
7mer
21926-21939
0.004
0
7mer
24043-24057
0.003
1
6mer
1341-1356
0.002
0
6mer
20043-20064
0.002
1
6mer
6370-6394
0.002
1
6mer
23880-23906
0.001
0
6mer
2685-2711
0.001
2
6mer
26480-26498
0.001
Not Conserved
RP11-680F20.10
hsa-miR-1-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-680
0.038
0
OTUD6B-AS1
hsa-miR-1-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524003
Biotype: antisense
Gene id: ENSG00000253738
Gene Name: OTUD6B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-495
0.034
0
6mer
1979-1993
0.004
0
AC098617.1
hsa-miR-1-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597204
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
636-658
0.038
1
LINC01320
hsa-miR-1-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603129
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-479
0.031
3
6mer
374-382
0.004
1
6mer
544-565
0.003
0
CTB-131K11.1
hsa-miR-1-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
835-853
0.038
9
LINC01500
hsa-miR-1-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556815
Biotype: lincRNA
Gene id: ENSG00000258583
Gene Name: LINC01500
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
622-640
0.038
5
CTD-2291D10.3
hsa-miR-1-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600896
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-231
0.038
0
RP11-96K19.4
hsa-miR-1-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4014-4029
0.031
1
6mer
1027-1043
0.006
1
LINC01301
hsa-miR-1-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506428
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
847-872
0.029
1
6mer
2392-2404
0.005
3
7mer
842-854
0.004
1
CTC-336P14.1
hsa-miR-1-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605811
Biotype: antisense
Gene id: ENSG00000271228
Gene Name: CTC-336P14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-201
0.038
4
COX10-AS1
hsa-miR-1-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602539
Biotype: antisense
Gene id: ENSG00000236088
Gene Name: COX10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
472-489
0.022
0
7mer
239-255
0.011
0
6mer
228-245
0.004
2
XLOC_009153
hsa-miR-1-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019319
Biotype: transcript isomorph
Gene id: XLOC_009153
Gene Name: XLOC_009153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-648
0.037
2
CTD-2024F21.1
hsa-miR-1-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622792
Biotype: sense_intronic
Gene id: ENSG00000277173
Gene Name: CTD-2024F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
890-915
0.019
1
7mer
593-614
0.018
2
XLOC_013708
hsa-miR-1-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1363
0.037
0
XLOC_013803
hsa-miR-1-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028444
Biotype: transcript isomorph
Gene id: XLOC_013803
Gene Name: XLOC_013803
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-98
0.020
2
7mer
355-372
0.018
2
RP11-15J22.5
hsa-miR-1-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610711
Biotype: lincRNA
Gene id: ENSG00000273970
Gene Name: RP11-15J22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-204
0.037
1
RP11-425A6.5
hsa-miR-1-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609313
Biotype: antisense
Gene id: ENSG00000273312
Gene Name: RP11-425A6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
896-919
0.037
1
RP1-23E21.2
hsa-miR-1-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452624
Biotype: lincRNA
Gene id: ENSG00000235099
Gene Name: RP1-23E21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-470
0.023
1
6mer
238-250
0.005
1
6mer
197-219
0.005
1
6mer
256-275
0.004
1
GS1-421I3.5
hsa-miR-1-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000616771
Biotype: lincRNA
Gene id: ENSG00000277663
Gene Name: GS1-421I3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-644
0.026
0
6mer
70-94
0.011
1
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