LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
STARD13-AS
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000589472
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
513-526
0.035
0
6mer
621-647
0.004
2
XLOC_001508
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003719
Biotype: transcript isomorph
Gene id: XLOC_001508
Gene Name: XLOC_001508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2411-2417
0.027
8
8mer
1493-1517
0.013
1
CTB-89H12.4
hsa-miR-1-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-422
0.019
6
7mer
5982-5993
0.009
3
6mer
1990-2012
0.004
11
6mer
8212-8226
0.004
0
6mer
4963-4984
0.002
2
6mer
6609-6623
0.001
0
XLOC_006820
hsa-miR-1-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014735
Biotype: transcript isomorph
Gene id: XLOC_006820
Gene Name: XLOC_006820
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-171
0.039
5
CTC-458G6.4
hsa-miR-1-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502383
Biotype: lincRNA
Gene id: ENSG00000248588
Gene Name: CTC-458G6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
304-322
0.039
1
ALMS1-IT1
hsa-miR-1-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046762.1
Biotype: sense
Gene id: NR_046762.1 (gene)
Gene Name: ALMS1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-679
0.022
0
7mer
935-953
0.017
1
AC105760.3
hsa-miR-1-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000244820
Biotype: antisense
Gene id: ENSG00000124835
Gene Name: AC105760.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2193-2216
0.017
3
7mer
2203-2222
0.008
1
7mer
1931-1957
0.006
1
6mer
31-58
0.005
1
6mer
831-855
0.002
Not Conserved
RP11-661A12.5
hsa-miR-1-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000530600
Biotype: antisense
Gene id: ENSG00000254859
Gene Name: RP11-661A12.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-90
0.039
1
RP11-44M6.1
hsa-miR-1-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000392471
Biotype: lincRNA
Gene id: ENSG00000225807
Gene Name: RP11-44M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-224
0.039
2
ACAP2-IT1
hsa-miR-1-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419899
Biotype: sense_intronic
Gene id: ENSG00000229325
Gene Name: ACAP2-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-628
0.039
3
FOXD2-AS1
hsa-miR-1-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445551
Biotype: antisense
Gene id: ENSG00000237424
Gene Name: FOXD2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-28
0.031
1
7mer
344-360
0.008
1
XXbac-BPG154L12.4
hsa-miR-1-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425033
Biotype: antisense
Gene id: ENSG00000225914
Gene Name: XXbac-BPG154L12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2890-2914
0.036
0
6mer
2086-2098
0.003
0
CTC-286N12.1
hsa-miR-1-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523497
Biotype: antisense
Gene id: ENSG00000254297
Gene Name: CTC-286N12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-337
0.034
1
6mer
163-183
0.005
1
CTD-2218G20.2
hsa-miR-1-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505518
Biotype: lincRNA
Gene id: ENSG00000248279
Gene Name: CTD-2218G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-364
0.014
0
7mer
192-205
0.011
0
8mer
726-740
0.010
1
6mer
1547-1563
0.004
1
XLOC_007089
hsa-miR-1-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10322-10343
0.012
0
8mer
9149-9171
0.008
0
6mer
10848-10864
0.005
0
7mer
9232-9247
0.003
Not Conserved
6mer
1726-1748
0.003
0
6mer
11064-11077
0.003
Not Conserved
7mer
9018-9034
0.002
Not Conserved
6mer
2787-2811
0.002
0
6mer
1584-1605
0.002
0
AC106900.6
hsa-miR-1-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418620
Biotype: lincRNA
Gene id: ENSG00000224638
Gene Name: AC106900.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-291
0.038
8
RP11-932O9.7
hsa-miR-1-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501830
Biotype: antisense
Gene id: ENSG00000247728
Gene Name: RP11-932O9.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-207
0.038
0
MYLK-AS1
hsa-miR-1-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463408
Biotype: antisense
Gene id: ENSG00000239523
Gene Name: MYLK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-82
0.036
1
6mer
26-43
0.003
1
MYLK-AS1
hsa-miR-1-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470449
Biotype: antisense
Gene id: ENSG00000239523
Gene Name: MYLK-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-82
0.036
1
6mer
26-43
0.003
1
CTD-2291D10.3
hsa-miR-1-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-225
0.038
0
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