LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
TPTEP1
hsa-miR-1-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4681-4698
0.023
0
8mer
3569-3587
0.005
0
7mer
1393-1410
0.004
0
7mer
1637-1646
0.003
0
7mer
1919-1936
0.003
0
7mer
1456-1471
0.001
0
6mer
3606-3627
0.001
0
RP1-78B3.1
hsa-miR-1-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5195-5212
0.029
1
6mer
8060-8081
0.007
3
6mer
743-755
0.004
4
TET2-AS1
hsa-miR-1-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515414
Biotype: antisense
Gene id: ENSG00000251586
Gene Name: TET2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-192
0.040
0
TRPM2-AS
hsa-miR-1-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1047-1053
0.029
0
7mer
724-747
0.011
1
CTC-523E23.5
hsa-miR-1-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600348
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1526-1550
0.020
0
7mer
322-349
0.020
1
TRAF3IP2-AS1
hsa-miR-1-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532226
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1625-1643
0.023
2
7mer
2018-2031
0.013
3
6mer
905-927
0.003
3
XLOC_009440
hsa-miR-1-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019636
Biotype: transcript isomorph
Gene id: XLOC_009440
Gene Name: XLOC_009440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-338
0.040
0
XLOC_002791
hsa-miR-1-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006193
Biotype: transcript isomorph
Gene id: XLOC_002791
Gene Name: XLOC_002791
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
559-577
0.015
3
7mer
572-593
0.012
6
7mer
574-582
0.010
2
6mer
90-107
0.003
0
LINC00152
hsa-miR-1-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455131
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-57
0.016
0
8mer
303-321
0.013
0
8mer
368-382
0.011
0
RP11-131L23.1
hsa-miR-1-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427819
Biotype: antisense
Gene id: ENSG00000223653
Gene Name: RP11-131L23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1603-1620
0.037
0
6mer
967-993
0.003
1
AC018799.1
hsa-miR-1-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450848
Biotype: lincRNA
Gene id: ENSG00000225539
Gene Name: AC018799.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-359
0.040
1
MALAT1
hsa-miR-1-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7124-7151
0.020
3
8mer
6924-6930
0.011
1
7mer
193-209
0.005
0
6mer
2674-2693
0.002
1
6mer
2852-2858
0.002
3
XLOC_013995
hsa-miR-1-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3794-3805
0.004
0
7mer
2787-2798
0.004
0
6mer
3746-3757
0.003
0
6mer
3458-3469
0.003
0
6mer
3650-3660
0.003
0
6mer
3698-3709
0.003
0
6mer
3410-3421
0.002
0
6mer
3314-3325
0.002
0
6mer
2979-2990
0.002
0
6mer
3218-3242
0.002
0
6mer
3266-3290
0.002
0
6mer
3170-3181
0.002
0
6mer
3122-3133
0.001
0
6mer
2883-2907
0.001
0
6mer
2931-2955
0.001
0
6mer
2547-2558
0.001
0
6mer
2643-2654
0.001
0
6mer
2739-2750
0.001
0
6mer
2691-2715
0.001
0
6mer
2595-2617
0.001
Not Conserved
ZMYM4-AS1
hsa-miR-1-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432683
Biotype: antisense
Gene id: ENSG00000227409
Gene Name: ZMYM4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-191
0.040
9
STARD13-AS
hsa-miR-1-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000589816
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
525-538
0.040
0
RP11-16C1.2
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578539
Biotype: sense_intronic
Gene id: ENSG00000264853
Gene Name: RP11-16C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-48
0.039
1
CTD-2579N5.3
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600673
Biotype: lincRNA
Gene id: ENSG00000268296
Gene Name: CTD-2579N5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-247
0.017
0
6mer
135-152
0.015
1
6mer
179-183
0.007
0
RP11-230G5.2
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538294
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-105
0.033
6
6mer
122-139
0.007
5
KIZ-AS1
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000433213
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-111
0.039
5
RP11-389C8.2
hsa-miR-1-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000564956
Biotype: sense_overlapping
Gene id: ENSG00000261269
Gene Name: RP11-389C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1845-1863
0.015
1
7mer
614-620
0.012
1
7mer
1557-1582
0.007
1
6mer
786-801
0.003
1
6mer
1000-1023
0.001
0
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