LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
AC007620.3
hsa-miR-1-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600539
Biotype: antisense
Gene id: ENSG00000242539
Gene Name: AC007620.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1600-1623
0.042
1
LINC01273
hsa-miR-1-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000411453
Biotype: lincRNA
Gene id: ENSG00000231742
Gene Name: LINC01273
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-305
0.024
1
8mer
205-211
0.018
Not Conserved
MIR4435-1HG
hsa-miR-1-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441075
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
648-675
0.015
0
8mer
323-337
0.014
0
8mer
384-402
0.013
0
RP11-630C16.1
hsa-miR-1-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552712
Biotype: lincRNA
Gene id: ENSG00000257784
Gene Name: RP11-630C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-322
0.042
0
LINC00174
hsa-miR-1-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438894
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-212
0.042
1
CTC-448F2.4
hsa-miR-1-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588402
Biotype: lincRNA
Gene id: ENSG00000267006
Gene Name: CTC-448F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-546
0.042
0
RP11-80I15.4
hsa-miR-1-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423075
Biotype: antisense
Gene id: ENSG00000229065
Gene Name: RP11-80I15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-259
0.032
2
7mer
93-114
0.009
1
RP11-152N13.16
hsa-miR-1-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000621900
Biotype: antisense
Gene id: ENSG00000272599
Gene Name: RP11-152N13.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-580
0.041
6
XLOC_004641
hsa-miR-1-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010179
Biotype: transcript isomorph
Gene id: XLOC_004641
Gene Name: XLOC_004641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-216
0.037
6
6mer
763-776
0.004
3
RP11-960L18.1
hsa-miR-1-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563954
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-388
0.029
1
7mer
431-445
0.012
0
AC006460.2
hsa-miR-1-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000411949
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-83
0.017
3
7mer
363-386
0.015
1
6mer
433-448
0.005
0
6mer
414-438
0.004
1
TTLL7-IT1
hsa-miR-1-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455929
Biotype: sense_intronic
Gene id: ENSG00000233061
Gene Name: TTLL7-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
888-894
0.016
3
7mer
137-142
0.014
1
6mer
566-585
0.005
1
6mer
130-142
0.005
0
6mer
1437-1459
0.002
0
RP11-793H13.8
hsa-miR-1-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547717
Biotype: retained_intron
Gene id: ENSG00000257379
Gene Name: RP11-793H13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1239-1253
0.035
12
7mer
981-1004
0.006
0
XLOC_000327
hsa-miR-1-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001084
Biotype: transcript isomorph
Gene id: XLOC_000327
Gene Name: XLOC_000327
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-226
0.041
3
RP11-946P6.6
hsa-miR-1-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619452
Biotype: sense_intronic
Gene id: ENSG00000277595
Gene Name: RP11-946P6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-194
0.041
0
CTD-2587M2.1
hsa-miR-1-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512693
Biotype: lincRNA
Gene id: ENSG00000249476
Gene Name: CTD-2587M2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-239
0.018
0
7mer
5131-5155
0.015
1
6mer
5038-5057
0.004
3
6mer
4953-4973
0.002
2
7mer
3697-3707
0.002
1
LINC00375
hsa-miR-1-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000433074
Biotype: lincRNA
Gene id: ENSG00000226370
Gene Name: LINC00375
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-225
0.041
1
RP11-1103G16.1
hsa-miR-1-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548631
Biotype: antisense
Gene id: ENSG00000257636
Gene Name: RP11-1103G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-177
0.041
8
AC012146.7
hsa-miR-1-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571138
Biotype: antisense
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-321
0.040
1
LINC00341
hsa-miR-1-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026779.1
Biotype: sense
Gene id: NR_026779.1 (gene)
Gene Name: LINC00341
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-425
0.024
0
8mer
1785-1791
0.012
1
7mer
959-964
0.005
1
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