LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
RP11-403N16.2
hsa-miR-1-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448475
Biotype: lincRNA
Gene id: ENSG00000232494
Gene Name: RP11-403N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-81
0.044
1
NUTM2B-AS1
hsa-miR-1-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
941-955
0.022
1
8mer
5698-5718
0.010
0
6mer
1056-1068
0.004
1
6mer
4936-4953
0.002
0
6mer
6534-6550
0.002
Not Conserved
6mer
932-950
0.002
0
6mer
2361-2385
0.002
1
RP11-362K14.5
hsa-miR-1-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602342
Biotype: antisense
Gene id: ENSG00000269984
Gene Name: RP11-362K14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1579-1594
0.043
9
SENP3-EIF4A1
hsa-miR-1-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037926.1
Biotype: sense
Gene id: NR_037926.1 (gene)
Gene Name: SENP3-EIF4A1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-722
0.043
9
XLOC_008025
hsa-miR-1-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017209
Biotype: transcript isomorph
Gene id: XLOC_008025
Gene Name: XLOC_008025
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
391-409
0.033
1
6mer
5-29
0.007
4
6mer
127-151
0.003
0
XLOC_008328
hsa-miR-1-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-206
0.031
0
6mer
528-532
0.013
0
RP11-562L8.1
hsa-miR-1-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548665
Biotype: lincRNA
Gene id: ENSG00000257522
Gene Name: RP11-562L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-384
0.043
5
ENTPD1-AS1
hsa-miR-1-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458228
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2885-2906
0.021
9
6mer
533-555
0.009
8
6mer
2914-2929
0.009
11
6mer
2960-2983
0.004
2
LINC01320
hsa-miR-1-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616475
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-402
0.040
3
6mer
467-488
0.003
0
XLOC_006664
hsa-miR-1-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014020
Biotype: transcript isomorph
Gene id: XLOC_006664
Gene Name: XLOC_006664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-65
0.043
1
CTA-796E4.5
hsa-miR-1-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
31673-31678
0.006
1
7mer
12281-12287
0.005
1
8mer
23122-23133
0.005
1
6mer
31280-31305
0.004
2
7mer
6438-6465
0.003
0
7mer
12489-12494
0.003
0
6mer
6405-6422
0.003
4
6mer
30972-30996
0.003
0
6mer
15551-15562
0.002
1
6mer
6983-6990
0.002
3
6mer
14096-14116
0.002
1
6mer
5980-6001
0.001
2
6mer
19380-19401
0.001
1
6mer
27045-27070
0.001
1
6mer
9864-9886
0.001
Not Conserved
6mer
29653-29670
0.001
0
6mer
12301-12307
0.001
2
ZFY-AS1
hsa-miR-1-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000431145
Biotype: antisense
Gene id: ENSG00000233070
Gene Name: ZFY-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-126
0.043
Not Conserved
SDCBP2-AS1
hsa-miR-1-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609745
Biotype: antisense
Gene id: ENSG00000234684
Gene Name: SDCBP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
604-621
0.043
0
RP11-135A1.2
hsa-miR-1-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418353
Biotype: antisense
Gene id: ENSG00000232874
Gene Name: RP11-135A1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-320
0.043
6
TTC21B-AS1
hsa-miR-1-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440322
Biotype: antisense
Gene id: ENSG00000224490
Gene Name: TTC21B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1488-1507
0.039
2
6mer
314-329
0.004
1
LINC01500
hsa-miR-1-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555378
Biotype: lincRNA
Gene id: ENSG00000258583
Gene Name: LINC01500
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
622-640
0.042
5
RP11-53B2.3
hsa-miR-1-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585366
Biotype: antisense
Gene id: ENSG00000267136
Gene Name: RP11-53B2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4550-4566
0.032
1
8mer
2347-2366
0.005
1
6mer
1825-1849
0.003
6
6mer
3383-3404
0.001
0
6mer
2837-2861
0.001
1
LINC01518
hsa-miR-1-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000411439
Biotype: lincRNA
Gene id: ENSG00000233515
Gene Name: LINC01518
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-205
0.042
1
RP11-848P1.5
hsa-miR-1-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583377
Biotype: antisense
Gene id: ENSG00000264107
Gene Name: RP11-848P1.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-389
0.030
5
7mer
35-52
0.012
1
XLOC_002759
hsa-miR-1-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-119
0.032
1
6mer
217-231
0.006
1
7mer
5037-5054
0.004
1
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