LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
AC012146.7
hsa-miR-1-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000413077
Biotype: antisense
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
320-335
0.045
1
LINC01043
hsa-miR-1-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565936
Biotype: lincRNA
Gene id: ENSG00000260343
Gene Name: LINC01043
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-432
0.008
Not Conserved
7mer
1136-1148
0.007
Not Conserved
7mer
624-637
0.006
Not Conserved
7mer
2497-2510
0.004
Not Conserved
7mer
4156-4172
0.004
Not Conserved
7mer
5480-5493
0.003
Not Conserved
7mer
2527-2544
0.002
Not Conserved
6mer
1919-1931
0.001
Not Conserved
6mer
2041-2067
0.001
0
6mer
2856-2881
0.001
Not Conserved
6mer
2667-2679
0.001
0
6mer
1268-1284
0.001
Not Conserved
6mer
5548-5560
0.001
Not Conserved
6mer
2143-2169
0.001
0
6mer
2293-2305
0.001
Not Conserved
6mer
2971-2983
0.001
Not Conserved
6mer
2177-2203
0.001
0
6mer
5568-5594
0.001
0
6mer
3001-3016
0.000
Not Conserved
XLOC_006319
hsa-miR-1-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014242
Biotype: transcript isomorph
Gene id: XLOC_006319
Gene Name: XLOC_006319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-35
0.005
0
6mer
83-96
0.004
0
6mer
144-157
0.004
0
6mer
182-199
0.004
0
6mer
205-218
0.004
0
6mer
60-77
0.004
Not Conserved
6mer
388-401
0.003
0
6mer
266-279
0.003
0
6mer
537-557
0.003
0
6mer
121-138
0.003
Not Conserved
6mer
365-382
0.003
Not Conserved
6mer
327-340
0.002
Not Conserved
6mer
304-321
0.002
Not Conserved
XLOC_008434
hsa-miR-1-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018704
Biotype: transcript isomorph
Gene id: XLOC_008434
Gene Name: XLOC_008434
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-138
0.028
0
7mer
401-412
0.013
1
6mer
55-75
0.004
1
AC140912.1
hsa-miR-1-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561802
Biotype: lincRNA
Gene id: ENSG00000261227
Gene Name: AC140912.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-125
0.045
2
RP11-19D2.2
hsa-miR-1-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569178
Biotype: lincRNA
Gene id: ENSG00000261249
Gene Name: RP11-19D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-490
0.042
5
6mer
1043-1051
0.003
0
RP11-324O2.3
hsa-miR-1-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449782
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
658-676
0.045
2
XLOC_007383
hsa-miR-1-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015999
Biotype: transcript isomorph
Gene id: XLOC_007383
Gene Name: XLOC_007383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
125-149
0.005
Not Conserved
6mer
287-293
0.004
Not Conserved
6mer
378-389
0.004
Not Conserved
6mer
1336-1342
0.004
Not Conserved
6mer
191-197
0.003
Not Conserved
6mer
1191-1198
0.003
Not Conserved
6mer
234-245
0.002
Not Conserved
6mer
1139-1150
0.002
Not Conserved
6mer
1091-1102
0.002
Not Conserved
6mer
995-1006
0.002
Not Conserved
6mer
808-814
0.002
Not Conserved
6mer
947-958
0.002
Not Conserved
6mer
454-478
0.002
Not Conserved
6mer
899-910
0.002
Not Conserved
6mer
515-526
0.002
Not Conserved
6mer
616-622
0.002
Not Conserved
6mer
563-574
0.002
Not Conserved
6mer
838-862
0.002
Not Conserved
LINC00556
hsa-miR-1-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569603
Biotype: antisense
Gene id: ENSG00000260131
Gene Name: LINC00556
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-70
0.045
1
XLOC_009308
hsa-miR-1-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019510
Biotype: transcript isomorph
Gene id: XLOC_009308
Gene Name: XLOC_009308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-240
0.045
1
RP11-562L8.1
hsa-miR-1-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551110
Biotype: lincRNA
Gene id: ENSG00000257522
Gene Name: RP11-562L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-333
0.045
5
XLOC_003649
hsa-miR-1-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008197
Biotype: transcript isomorph
Gene id: XLOC_003649
Gene Name: XLOC_003649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1250-1256
0.025
1
8mer
1457-1480
0.020
0
RP11-299H22.6
hsa-miR-1-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568092
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3050-3056
0.032
0
6mer
303-327
0.007
1
7mer
1399-1413
0.006
0
IL12A-AS1
hsa-miR-1-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486168
Biotype: antisense
Gene id: ENSG00000244040
Gene Name: IL12A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-77
0.044
1
LEF1-AS1
hsa-miR-1-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508266
Biotype: antisense
Gene id: ENSG00000232021
Gene Name: LEF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-398
0.044
8
SATB1-AS1
hsa-miR-1-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598390
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-536
0.044
1
XLOC_009243
hsa-miR-1-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019425
Biotype: transcript isomorph
Gene id: XLOC_009243
Gene Name: XLOC_009243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-323
0.038
1
6mer
200-217
0.006
1
GS1-358P8.4
hsa-miR-1-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4759-4769
0.022
1
8mer
2894-2910
0.020
3
6mer
2144-2161
0.002
3
AC093375.1
hsa-miR-1-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448255
Biotype: lincRNA
Gene id: ENSG00000226383
Gene Name: AC093375.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-513
0.037
1
7mer
392-408
0.007
1
XLOC_011275
hsa-miR-1-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023435
Biotype: transcript isomorph
Gene id: XLOC_011275
Gene Name: XLOC_011275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-404
0.034
1
6mer
124-147
0.009
4
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