LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-1-3p


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Gene
miRNA
Score
DIANA Links
LINC01021
hsa-miR-1-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505775
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
773-797
0.046
4
CCDC39-AS1
hsa-miR-1-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495357
Biotype: antisense
Gene id: ENSG00000243187
Gene Name: CCDC39-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-215
0.046
8
AC004448.5
hsa-miR-1-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609396
Biotype: lincRNA
Gene id: ENSG00000235979
Gene Name: AC004448.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-59
0.046
0
AC069394.1
hsa-miR-1-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446520
Biotype: lincRNA
Gene id: ENSG00000224231
Gene Name: AC069394.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-140
0.046
2
SNHG4
hsa-miR-1-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_036536.1
Biotype: sense
Gene id: NR_036536.1 (gene)
Gene Name: SNHG4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
869-883
0.046
1
AC018799.1
hsa-miR-1-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419786
Biotype: lincRNA
Gene id: ENSG00000225539
Gene Name: AC018799.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
339-346
0.040
1
6mer
772-792
0.006
1
CYP4F26P
hsa-miR-1-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000433357
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-604
0.046
0
KB-173C10.2
hsa-miR-1-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519844
Biotype: lincRNA
Gene id: ENSG00000253824
Gene Name: KB-173C10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-567
0.035
1
7mer
607-632
0.011
2
XLOC_009663
hsa-miR-1-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021065
Biotype: transcript isomorph
Gene id: XLOC_009663
Gene Name: XLOC_009663
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-445
0.046
0
NAALADL2-AS2
hsa-miR-1-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424690
Biotype: antisense
Gene id: ENSG00000226779
Gene Name: NAALADL2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-345
0.042
0
6mer
895-901
0.004
0
AC018799.1
hsa-miR-1-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110222.1
Biotype: lincRNA
Gene id: NR_110222.1 (gene)
Gene Name: AC018799.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
352-359
0.039
1
6mer
785-805
0.006
1
RP11-280K24.4
hsa-miR-1-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553312
Biotype: sense_overlapping
Gene id: ENSG00000258535
Gene Name: RP11-280K24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3506-3526
0.024
1
7mer
5900-5915
0.014
1
7mer
3410-3436
0.004
1
6mer
3964-3984
0.001
1
6mer
1289-1311
0.001
0
6mer
3579-3588
0.001
1
AC102948.2
hsa-miR-1-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000412360
Biotype: lincRNA
Gene id: ENSG00000226364
Gene Name: AC102948.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
665-672
0.046
0
ADAMTS9-AS1
hsa-miR-1-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594810
Biotype: antisense
Gene id: ENSG00000241158
Gene Name: ADAMTS9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2095-2105
0.031
8
8mer
1376-1382
0.008
2
6mer
2695-2708
0.004
4
7mer
2114-2129
0.002
2
XLOC_007642
hsa-miR-1-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016267
Biotype: transcript isomorph
Gene id: XLOC_007642
Gene Name: XLOC_007642
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-328
0.045
5
RP11-266K4.14
hsa-miR-1-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3222-3239
0.035
0
6mer
621-640
0.010
1
RP11-562L8.1
hsa-miR-1-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548306
Biotype: lincRNA
Gene id: ENSG00000257522
Gene Name: RP11-562L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-264
0.045
5
RP11-108M9.6
hsa-miR-1-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606899
Biotype: lincRNA
Gene id: ENSG00000272426
Gene Name: RP11-108M9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-293
0.045
0
XXbac-BPG249D20.9
hsa-miR-1-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415195
Biotype: antisense
Gene id: ENSG00000235781
Gene Name: XXbac-BPG249D20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-150
0.045
0
RP11-168K9.2
hsa-miR-1-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527317
Biotype: lincRNA
Gene id: ENSG00000255087
Gene Name: RP11-168K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-1-3p
Sequence: uggaauguaaagaaguauguau
MirBase ID: MIMAT0000416
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2235-2251
0.045
3
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