LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000269
hsa-let-7a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000242
Biotype: transcript isomorph
Gene id: XLOC_000269
Gene Name: XLOC_000269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1692-1705
0.040
1
6mer
1192-1216
0.002
1
RP11-809F4.3
hsa-let-7a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-31
0.042
0
RP11-458F8.4
hsa-let-7a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
3139-3153
0.017
0
7mer
2777-2796
0.008
0
6mer
2872-2891
0.004
1
6mer
91-108
0.004
0
6mer
2460-2478
0.004
1
7mer
718-745
0.003
Not Conserved
6mer
2151-2162
0.002
0
RP11-757G1.6
hsa-let-7a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2223-2245
0.038
0
6mer
1703-1726
0.004
0
AC011306.1
hsa-let-7a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451034
Biotype: lincRNA
Gene id: ENSG00000229805
Gene Name: AC011306.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
412-422
0.042
1
XLOC_008619
hsa-let-7a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018338
Biotype: transcript isomorph
Gene id: XLOC_008619
Gene Name: XLOC_008619
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
906-929
0.021
2
8mer+wobble
124-145
0.009
0
6mer
1742-1756
0.006
4
6mer
1418-1432
0.004
1
6mer
203-220
0.002
1
DSCR8
hsa-let-7a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026838.1
Biotype: sense
Gene id: NR_026838.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-812
0.041
5
RP3-412A9.17
hsa-let-7a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7030-7052
0.006
1
8mer
3333-3355
0.005
1
7mer
7457-7477
0.004
1
7mer
2989-3004
0.004
0
8mer
10329-10344
0.004
Not Conserved
7mer
11919-11944
0.004
1
7mer
14749-14768
0.003
1
7mer
13195-13206
0.002
0
8mer+wobble
16163-16180
0.002
Not Conserved
6mer
12751-12777
0.002
1
6mer
10819-10846
0.001
0
6mer
3133-3156
0.001
1
6mer
10445-10461
0.001
1
6mer
7598-7621
0.001
1
6mer
3596-3621
0.001
2
6mer
13931-13954
0.001
1
RP11-23J9.4
hsa-let-7a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000532526
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-713
0.032
6
8mer
1586-1598
0.008
3
7mer
4097-4122
0.002
0
RP11-556I14.1
hsa-let-7a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515649
Biotype: lincRNA
Gene id: ENSG00000248373
Gene Name: RP11-556I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-167
0.037
1
6mer
35-62
0.004
0
RP1-68D18.3
hsa-let-7a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532760
Biotype: antisense
Gene id: ENSG00000255004
Gene Name: RP1-68D18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-216
0.041
1
CTD-2311B13.2
hsa-let-7a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000549951
Biotype: lincRNA
Gene id: ENSG00000258265
Gene Name: CTD-2311B13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-122
0.041
1
MEG3
hsa-let-7a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1542-1564
0.040
5
RP11-132E11.2
hsa-let-7a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430545
Biotype: lincRNA
Gene id: ENSG00000237153
Gene Name: RP11-132E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-110
0.021
1
7mer
222-238
0.019
1
RP11-197N18.7
hsa-let-7a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000506255
Biotype: lincRNA
Gene id: ENSG00000251497
Gene Name: RP11-197N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2048-2066
0.034
0
6mer
1553-1575
0.002
4
6mer
651-667
0.002
0
6mer
1393-1415
0.001
1
MEG3
hsa-let-7a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522618
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
871-893
0.040
5
MEG3
hsa-let-7a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398518
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1584-1606
0.040
5
RP11-23J9.4
hsa-let-7a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000534123
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-713
0.031
6
8mer
2026-2038
0.008
3
7mer
5152-5177
0.001
0
RP11-23J9.4
hsa-let-7a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000357054
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-713
0.031
6
8mer
2026-2038
0.008
3
7mer
4537-4562
0.001
0
CTD-3018O17.3
hsa-let-7a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601562
Biotype: lincRNA
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
528-546
0.040
1
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