LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-180P8.3
hsa-let-7a-5p
0.932
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-508
0.053
0
RP11-96D1.9
hsa-let-7a-5p
0.931
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575953
Biotype: sense_intronic
Gene id: ENSG00000262514
Gene Name: RP11-96D1.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-928
0.045
1
6mer
241-262
0.005
0
8mer+wobble
26-43
0.003
0
RP11-14J7.6
hsa-let-7a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554006
Biotype: antisense
Gene id: ENSG00000258573
Gene Name: RP11-14J7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
429-454
0.053
1
XLOC_012784
hsa-let-7a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2291-2312
0.031
0
6mer
66-93
0.014
0
6mer
1656-1677
0.008
0
ZNRD1-AS1
hsa-let-7a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431012
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-387
0.053
0
XLOC_011433
hsa-let-7a-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023634
Biotype: transcript isomorph
Gene id: XLOC_011433
Gene Name: XLOC_011433
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-592
0.047
1
6mer
369-383
0.005
1
XLOC_003567
hsa-let-7a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007360
Biotype: transcript isomorph
Gene id: XLOC_003567
Gene Name: XLOC_003567
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-370
0.051
1
RP11-283C24.1
hsa-let-7a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578585
Biotype: lincRNA
Gene id: ENSG00000264215
Gene Name: RP11-283C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1105-1122
0.044
0
6mer
163-185
0.007
0
CYP4F26P
hsa-let-7a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000433357
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
388-414
0.051
0
RP11-304L19.2
hsa-let-7a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562027
Biotype: antisense
Gene id: ENSG00000260447
Gene Name: RP11-304L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
572-590
0.050
0
LOC100240735
hsa-let-7a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_026658.1
Biotype: lincRNA
Gene id: NR_026658.1 (gene)
Gene Name: LOC100240735
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-627
0.050
2
LCMT1-AS2
hsa-let-7a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
216-236
0.013
1
6mer
5189-5214
0.012
1
7mer
100-124
0.012
0
6mer
1798-1809
0.005
1
6mer
3963-3983
0.004
1
6mer
2251-2272
0.002
0
6mer
1633-1644
0.002
0
RP11-438B23.2
hsa-let-7a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
817-833
0.042
9
6mer
6308-6331
0.005
2
6mer
2446-2468
0.001
Not Conserved
6mer
2361-2383
0.001
4
XLOC_008829
hsa-let-7a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018522
Biotype: transcript isomorph
Gene id: XLOC_008829
Gene Name: XLOC_008829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-211
0.038
0
6mer
66-81
0.011
0
RP11-932O9.9
hsa-let-7a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602594
Biotype: lincRNA
Gene id: ENSG00000269930
Gene Name: RP11-932O9.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-149
0.048
1
XLOC_001659
hsa-let-7a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003851
Biotype: transcript isomorph
Gene id: XLOC_001659
Gene Name: XLOC_001659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
634-659
0.048
3
MEG3
hsa-let-7a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521404
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1341-1363
0.048
5
CTC-338M12.4
hsa-let-7a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599439
Biotype: retained_intron
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1193-1214
0.038
2
6mer
1581-1594
0.010
3
RP11-834C11.4
hsa-let-7a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508564
Biotype: lincRNA
Gene id: ENSG00000250742
Gene Name: RP11-834C11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1251-1275
0.048
4
HOXA10-HOXA9
hsa-let-7a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-102
0.030
10
7mer
1292-1309
0.014
8
6mer
1250-1272
0.003
12
6mer
1030-1044
0.001
1
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