LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009855
hsa-let-7a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
886-912
0.051
1
7mer
83-98
0.007
Not Conserved
AC005537.2
hsa-let-7a-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
236-252
0.058
0
RP11-325F22.5
hsa-let-7a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453666
Biotype: lincRNA
Gene id: ENSG00000225329
Gene Name: RP11-325F22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-529
0.041
1
7mer
133-153
0.017
1
LHFPL3-AS2
hsa-let-7a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_027374.1
Biotype: antisense
Gene id: NR_027374.1 (gene)
Gene Name: LHFPL3-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1697-1706
0.041
1
8mer
862-878
0.008
0
8mer+wobble
855-878
0.005
1
8mer+wobble
1477-1499
0.003
0
RP3-522P13.3
hsa-let-7a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000413898
Biotype: antisense
Gene id: ENSG00000235733
Gene Name: RP3-522P13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-68
0.050
1
8mer
137-152
0.007
0
RP11-53B2.2
hsa-let-7a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587344
Biotype: sense_intronic
Gene id: ENSG00000267702
Gene Name: RP11-53B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4175-4195
0.050
1
6mer
323-338
0.004
0
6mer
1059-1079
0.001
Not Conserved
6mer
2902-2925
0.001
1
RP11-347H15.4
hsa-let-7a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525654
Biotype: lincRNA
Gene id: ENSG00000254518
Gene Name: RP11-347H15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-257
0.057
1
BACE1-AS
hsa-let-7a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037803.1
Biotype: antisense
Gene id: NR_037803.1 (gene)
Gene Name: BACE1-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-666
0.056
7
XLOC_003898
hsa-let-7a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008445
Biotype: transcript isomorph
Gene id: XLOC_003898
Gene Name: XLOC_003898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-436
0.052
1
6mer
456-479
0.005
2
LINC01061
hsa-let-7a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4512-4535
0.025
1
8mer
1773-1785
0.007
0
7mer
4608-4626
0.005
0
8mer+wobble
1219-1231
0.004
0
8mer+wobble
3807-3819
0.003
Not Conserved
6mer
4374-4396
0.003
0
8mer+wobble
3744-3757
0.003
0
8mer+wobble
3327-3351
0.002
0
6mer
2160-2185
0.002
0
8mer+wobble
2032-2058
0.002
0
RP11-391M1.4
hsa-let-7a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1216-1237
0.037
0
7mer
454-474
0.015
0
6mer
127-151
0.004
0
TUG1
hsa-let-7a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-280
0.039
8
6mer
897-911
0.004
5
6mer
4844-4862
0.003
3
6mer
3687-3711
0.003
8
6mer
1726-1742
0.003
5
6mer
4917-4943
0.002
1
6mer
4211-4238
0.001
1
CTA-941F9.10
hsa-let-7a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5231-5256
0.010
1
7mer
682-708
0.010
Not Conserved
7mer
12455-12478
0.005
0
7mer
20172-20193
0.005
2
7mer
16364-16383
0.003
1
6mer
22828-22842
0.003
0
6mer
8983-9005
0.002
1
6mer
22173-22193
0.002
2
6mer
22087-22107
0.002
1
6mer
10403-10422
0.001
0
6mer
11836-11854
0.001
Not Conserved
6mer
3004-3027
0.001
0
6mer
16027-16040
0.001
1
6mer
10243-10257
0.001
1
6mer
9746-9763
0.001
2
6mer
7974-7997
0.001
0
6mer
18641-18659
0.001
0
6mer
13063-13086
0.001
1
6mer
2297-2320
0.001
0
6mer
19679-19694
0.001
1
6mer
11177-11200
0.001
1
6mer
8000-8013
0.000
0
XLOC_011696
hsa-let-7a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-627
0.043
0
6mer
1047-1064
0.008
0
6mer
1659-1676
0.004
Not Conserved
AC002480.4
hsa-let-7a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439823
Biotype: antisense
Gene id: ENSG00000232949
Gene Name: AC002480.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-52
0.036
1
9mer
504-521
0.019
Not Conserved
XLOC_013018
hsa-let-7a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026966
Biotype: transcript isomorph
Gene id: XLOC_013018
Gene Name: XLOC_013018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-50
0.051
1
6mer
311-331
0.003
Not Conserved
AC104655.3
hsa-let-7a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452037
Biotype: lincRNA
Gene id: ENSG00000226508
Gene Name: AC104655.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-391
0.054
1
AC104777.3
hsa-let-7a-5p
0.934
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416350
Biotype: lincRNA
Gene id: ENSG00000237220
Gene Name: AC104777.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
77-102
0.054
0
RP6-91H8.1
hsa-let-7a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553621
Biotype: lincRNA
Gene id: ENSG00000258517
Gene Name: RP6-91H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-507
0.054
2
XLOC_001373
hsa-let-7a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003589
Biotype: transcript isomorph
Gene id: XLOC_001373
Gene Name: XLOC_001373
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-110
0.054
0
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