LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
CYP4F26P
hsa-let-7a-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602933
Biotype: lincRNA
Gene id: ENSG00000226562
Gene Name: CYP4F26P
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19-45
0.065
0
AC005027.3
hsa-let-7a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416150
Biotype: sense_overlapping
Gene id: ENSG00000236310
Gene Name: AC005027.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-192
0.064
1
RP11-161H23.9
hsa-let-7a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553259
Biotype: antisense
Gene id: ENSG00000258334
Gene Name: RP11-161H23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-102
0.062
2
6mer
2621-2639
0.001
2
CTD-2227C6.2
hsa-let-7a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514840
Biotype: lincRNA
Gene id: ENSG00000249664
Gene Name: CTD-2227C6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
491-509
0.063
0
RP11-20J15.2
hsa-let-7a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437014
Biotype: lincRNA
Gene id: ENSG00000237590
Gene Name: RP11-20J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-467
0.063
1
AC006548.28
hsa-let-7a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
69489-69510
0.016
0
7mer
73810-73826
0.005
0
7mer
7399-7422
0.004
0
8mer
14595-14615
0.003
0
6mer
521-538
0.003
0
7mer
68517-68531
0.003
0
6mer
58287-58310
0.002
0
6mer
68523-68543
0.002
0
6mer
34390-34415
0.001
1
6mer
59703-59718
0.001
1
6mer
83225-83238
0.001
1
6mer
77607-77623
0.001
0
6mer
16731-16747
0.001
0
6mer
54160-54176
0.001
Not Conserved
6mer
82999-83025
0.001
1
6mer
38575-38596
0.001
3
6mer
3430-3444
0.001
0
6mer
57401-57411
0.001
1
6mer
20245-20259
0.001
3
6mer
17488-17500
0.001
1
6mer
82201-82226
0.001
0
6mer
62769-62791
0.001
0
6mer
22965-22985
0.001
1
6mer
51712-51731
0.001
Not Conserved
6mer
21010-21032
0.001
1
6mer
8895-8909
0.001
Not Conserved
6mer
15715-15731
0.001
2
6mer
13264-13285
0.001
0
6mer
16076-16092
0.001
0
6mer
15591-15612
0.001
0
6mer
59560-59583
0.001
1
6mer
17418-17444
0.000
0
RP11-91N2.3
hsa-let-7a-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445631
Biotype: lincRNA
Gene id: ENSG00000231052
Gene Name: RP11-91N2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-85
0.062
1
RP4-610C12.3
hsa-let-7a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454331
Biotype: lincRNA
Gene id: ENSG00000225490
Gene Name: RP4-610C12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-538
0.062
1
XIST
hsa-let-7a-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000421322
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-251
0.062
1
XLOC_013274
hsa-let-7a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6422-6437
0.026
0
7mer
138-161
0.021
0
6mer
257-280
0.004
0
6mer
5976-5999
0.003
0
6mer
1289-1313
0.003
0
6mer
6304-6327
0.003
0
6mer
3707-3730
0.002
0
XLOC_010445
hsa-let-7a-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5721-5740
0.033
1
7mer
5821-5839
0.025
1
6mer
4159-4182
0.001
1
6mer
3440-3465
0.001
1
6mer
3610-3633
0.001
1
RP11-718G2.5
hsa-let-7a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553791
Biotype: lincRNA
Gene id: ENSG00000259033
Gene Name: RP11-718G2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-288
0.044
1
7mer
412-431
0.017
1
XLOC_011590
hsa-let-7a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023797
Biotype: transcript isomorph
Gene id: XLOC_011590
Gene Name: XLOC_011590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-145
0.056
1
6mer
241-260
0.004
2
RP11-645C24.5
hsa-let-7a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567370
Biotype: lincRNA
Gene id: ENSG00000260306
Gene Name: RP11-645C24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
934-957
0.052
2
7mer
339-361
0.008
0
LINC00221
hsa-let-7a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619530
Biotype: lincRNA
Gene id: ENSG00000270816
Gene Name: LINC00221
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1337-1353
0.030
1
7mer
1255-1267
0.023
1
6mer
1206-1226
0.004
0
6mer
596-620
0.003
0
XLOC_008981
hsa-let-7a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018063
Biotype: transcript isomorph
Gene id: XLOC_008981
Gene Name: XLOC_008981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-305
0.060
2
RP11-105C19.2
hsa-let-7a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567401
Biotype: lincRNA
Gene id: ENSG00000260973
Gene Name: RP11-105C19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
935-958
0.051
3
7mer
339-361
0.009
1
MIR6818
hsa-let-7a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5411-5431
0.009
3
8mer
16363-16369
0.008
0
7mer
48147-48167
0.004
1
8mer
2773-2798
0.004
1
6mer
43189-43204
0.004
14
6mer
12776-12795
0.003
2
6mer
26618-26644
0.003
3
6mer
10701-10719
0.002
3
6mer
27133-27159
0.002
1
6mer
3384-3400
0.002
0
8mer+mismatch
41930-41948
0.002
1
6mer
14597-14620
0.001
2
6mer
25071-25095
0.001
4
6mer
6091-6117
0.001
1
6mer
14814-14838
0.001
2
6mer
25932-25950
0.001
4
6mer
20598-20615
0.001
0
6mer
14018-14041
0.001
1
6mer
27323-27336
0.001
1
6mer
6217-6237
0.001
1
6mer
11068-11091
0.001
0
6mer
17116-17138
0.001
1
6mer
21295-21309
0.001
0
6mer
6335-6358
0.001
1
6mer
40039-40062
0.001
0
6mer
20847-20870
0.001
1
6mer
45130-45153
0.001
0
6mer
14771-14788
0.000
1
RP11-119H12.6
hsa-let-7a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511590
Biotype: antisense
Gene id: ENSG00000251126
Gene Name: RP11-119H12.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-356
0.051
2
7mer
212-232
0.008
2
RP11-23J9.4
hsa-let-7a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-131
0.049
6
8mer
1444-1456
0.008
3
7mer
4440-4465
0.002
0
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