LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-456O19.4
hsa-let-7a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591974
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
225-245
0.016
8
7mer
1370-1386
0.009
0
GJA9-MYCBP
hsa-let-7a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1099
0.025
8
LINC00174
hsa-let-7a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4364-4380
0.007
0
8mer+wobble
1574-1594
0.004
0
6mer
155-182
0.003
0
8mer+wobble
2759-2784
0.003
0
7mer
3220-3236
0.003
0
6mer
4060-4082
0.002
1
6mer
3950-3975
0.002
1
6mer
1431-1456
0.001
1
RP11-161D15.3
hsa-let-7a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511291
Biotype: lincRNA
Gene id: ENSG00000251216
Gene Name: RP11-161D15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1137-1157
0.019
2
6mer
1450-1476
0.003
1
6mer
1582-1596
0.003
1
RP11-153K16.1
hsa-let-7a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545400
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1539-1563
0.019
1
6mer
1483-1502
0.004
0
6mer
481-504
0.002
2
RP11-94C24.13
hsa-let-7a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620769
Biotype: lincRNA
Gene id: ENSG00000275897
Gene Name: RP11-94C24.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
76-86
0.004
0
6mer
232-258
0.004
2
6mer
263-282
0.002
0
6mer
287-306
0.002
0
6mer
551-570
0.002
1
6mer
431-450
0.001
0
6mer
479-498
0.001
0
6mer
359-378
0.001
Not Conserved
6mer
1248-1271
0.001
1
6mer
455-475
0.001
0
6mer
335-355
0.001
Not Conserved
6mer
311-331
0.001
Not Conserved
6mer
527-547
0.001
0
6mer
503-523
0.001
0
6mer
383-403
0.001
Not Conserved
6mer
407-427
0.001
Not Conserved
CTB-39G8.3
hsa-let-7a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592389
Biotype: antisense
Gene id: ENSG00000267344
Gene Name: CTB-39G8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-428
0.021
4
6mer
237-250
0.004
1
RP11-45L9.1
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509003
Biotype: antisense
Gene id: ENSG00000251175
Gene Name: RP11-45L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-329
0.025
3
SLC26A4-AS1
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440512
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3505-3524
0.025
1
BLACAT1
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103783.1
Biotype: sense
Gene id: NR_103783.1 (gene)
Gene Name: BLACAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2040-2055
0.020
3
6mer
2285-2306
0.004
3
RP11-552I14.1
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552759
Biotype: lincRNA
Gene id: ENSG00000257860
Gene Name: RP11-552I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-437
0.022
0
6mer
336-354
0.003
1
XLOC_013484
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028125
Biotype: transcript isomorph
Gene id: XLOC_013484
Gene Name: XLOC_013484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
445-464
0.025
1
MIAT
hsa-let-7a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439738
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-507
0.025
1
MIAT
hsa-let-7a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000421867
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-836
0.025
1
RP11-1105G2.3
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551941
Biotype: antisense
Gene id: ENSG00000258365
Gene Name: RP11-1105G2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-165
0.025
1
LINC01125
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605017
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
385-408
0.015
1
8mer+wobble
76-92
0.010
0
RP11-779P15.1
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471993
Biotype: lincRNA
Gene id: ENSG00000243296
Gene Name: RP11-779P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-80
0.025
1
RP11-1007O24.2
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568345
Biotype: lincRNA
Gene id: ENSG00000261187
Gene Name: RP11-1007O24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-71
0.025
1
LINC00999
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
996-1019
0.012
1
6mer
379-403
0.004
1
7mer
905-923
0.004
0
8mer+wobble
1772-1785
0.003
0
6mer
1138-1157
0.002
1
CTC-527H23.3
hsa-let-7a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561876
Biotype: lincRNA
Gene id: ENSG00000260052
Gene Name: CTC-527H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-271
0.025
1
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