LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP1-296L11.1
hsa-let-7a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528872
Biotype: antisense
Gene id: ENSG00000255525
Gene Name: RP1-296L11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-335
0.025
9
LOC285768
hsa-let-7a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027116.1
Biotype: lincRNA
Gene id: NR_027116.1 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
71-95
0.014
Not Conserved
7mer
1758-1779
0.012
Not Conserved
LOC285768
hsa-let-7a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027115.2
Biotype: lincRNA
Gene id: NR_027115.2 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
71-95
0.014
Not Conserved
7mer
1865-1886
0.012
Not Conserved
RP11-819C21.1
hsa-let-7a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2182-2204
0.025
0
AC135048.13
hsa-let-7a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566056
Biotype: processed_transcript
Gene id: ENSG00000261487
Gene Name: AC135048.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-181
0.019
8
7mer
540-562
0.005
1
6mer
907-922
0.002
0
MIR124-2HG
hsa-let-7a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519741
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
625-645
0.025
1
RP11-219B17.1
hsa-let-7a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501579
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-560
0.022
1
6mer
196-216
0.003
1
XLOC_008693
hsa-let-7a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018409
Biotype: transcript isomorph
Gene id: XLOC_008693
Gene Name: XLOC_008693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1001-1023
0.021
1
6mer
207-233
0.005
2
RP5-898I4.1
hsa-let-7a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623740
Biotype: sense_overlapping
Gene id: ENSG00000280395
Gene Name: RP5-898I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3478-3505
0.016
0
7mer
2777-2803
0.006
Not Conserved
6mer
385-408
0.002
0
6mer
859-881
0.001
0
RP11-143J12.3
hsa-let-7a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579467
Biotype: antisense
Gene id: ENSG00000263847
Gene Name: RP11-143J12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-441
0.025
1
LINC01206
hsa-let-7a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476815
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-166
0.025
0
MIAT
hsa-let-7a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458302
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
465-489
0.025
1
LINC00668
hsa-let-7a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580197
Biotype: lincRNA
Gene id: ENSG00000265933
Gene Name: LINC00668
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
849-863
0.024
1
8mer+wobble
1338-1363
0.002
Not Conserved
AC023115.4
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450944
Biotype: lincRNA
Gene id: ENSG00000236605
Gene Name: AC023115.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
106-127
0.025
1
EMC3-AS1
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_103821.1
Biotype: antisense
Gene id: NR_103821.1 (gene)
Gene Name: EMC3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3490-3513
0.013
0
9mer
4208-4228
0.011
Not Conserved
6mer
2662-2674
0.001
Not Conserved
FBXO22-AS1
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_003136.1
Biotype: antisense
Gene id: NR_003136.1 (gene)
Gene Name: FBXO22-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-368
0.025
3
SNCA-AS1
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501215
Biotype: antisense
Gene id: ENSG00000247775
Gene Name: SNCA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2493-2516
0.025
0
XLOC_012839
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
860-870
0.025
1
RP11-529K1.2
hsa-let-7a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570278
Biotype: retained_intron
Gene id: ENSG00000261777
Gene Name: RP11-529K1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-674
0.025
1
RP1-78B3.1
hsa-let-7a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000625157
Biotype: lincRNA
Gene id: ENSG00000279652
Gene Name: RP1-78B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6003-6028
0.019
3
6mer
1219-1235
0.002
1
6mer
7742-7764
0.002
0
6mer
2448-2463
0.001
1
6mer
2180-2202
0.001
1
6mer
6267-6290
0.001
1
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