LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP3-323A16.1
hsa-let-7a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24520-24542
0.004
1
6mer
53834-53851
0.003
1
6mer
418-441
0.003
0
7mer
14375-14393
0.002
0
6mer
28550-28564
0.002
1
6mer
40156-40181
0.002
0
6mer
17983-18004
0.002
1
6mer
48709-48720
0.001
0
6mer
13027-13043
0.001
1
6mer
36928-36946
0.001
0
6mer
10905-10926
0.001
0
6mer
21914-21936
0.001
1
6mer
45687-45704
0.001
1
6mer
4900-4920
0.001
0
6mer
43685-43705
0.001
0
6mer
24587-24609
0.001
1
6mer
22033-22056
0.001
1
CTD-2540L5.6
hsa-let-7a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-416
0.017
1
7mer
814-827
0.005
0
6mer
2710-2723
0.004
1
RP11-344E13.3
hsa-let-7a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577537
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3540-3558
0.019
Not Conserved
7mer
2159-2185
0.007
Not Conserved
AP000295.10
hsa-let-7a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609556
Biotype: lincRNA
Gene id: ENSG00000272659
Gene Name: AP000295.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-286
0.022
0
6mer
160-171
0.004
1
XLOC_010133
hsa-let-7a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
808-824
0.014
0
6mer
318-335
0.011
0
CTC-327F10.4
hsa-let-7a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505162
Biotype: antisense
Gene id: ENSG00000251320
Gene Name: CTC-327F10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-271
0.026
2
MORF4L2-AS1
hsa-let-7a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435306
Biotype: antisense
Gene id: ENSG00000231154
Gene Name: MORF4L2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1837-1855
0.011
1
6mer
316-336
0.005
5
6mer
1250-1268
0.004
3
6mer
1723-1746
0.003
1
6mer
917-934
0.003
1
AC025165.8
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000444467
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1458-1473
0.026
10
MIR4435-1HG
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439494
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-143
0.026
1
MIAT
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000425476
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
479-503
0.026
1
AC074389.7
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450458
Biotype: lincRNA
Gene id: ENSG00000234977
Gene Name: AC074389.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-27
0.026
3
HCG9
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000463275
Biotype: lincRNA
Gene id: ENSG00000204625
Gene Name: HCG9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-78
0.026
1
RP11-514F8.2
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436500
Biotype: lincRNA
Gene id: ENSG00000231082
Gene Name: RP11-514F8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-279
0.026
1
RP5-951N9.1
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513082
Biotype: antisense
Gene id: ENSG00000249028
Gene Name: RP5-951N9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1852-1867
0.017
1
6mer
1682-1698
0.004
1
6mer
1404-1429
0.003
1
6mer
1388-1409
0.002
0
RP11-669I1.1
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562795
Biotype: lincRNA
Gene id: ENSG00000260569
Gene Name: RP11-669I1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
844-859
0.018
1
6mer
94-121
0.005
1
6mer
728-751
0.003
0
XLOC_002882
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006281
Biotype: transcript isomorph
Gene id: XLOC_002882
Gene Name: XLOC_002882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3997-4014
0.010
2
7mer
2065-2082
0.006
1
6mer
225-249
0.005
0
7mer
2334-2348
0.004
2
RP11-398A8.5
hsa-let-7a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000618391
Biotype: lincRNA
Gene id: ENSG00000276471
Gene Name: RP11-398A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-147
0.025
Not Conserved
XLOC_008583
hsa-let-7a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018307
Biotype: transcript isomorph
Gene id: XLOC_008583
Gene Name: XLOC_008583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-51
0.024
3
6mer
1681-1696
0.002
1
LINC01002
hsa-let-7a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614996
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-144
0.012
Not Conserved
6mer
272-291
0.006
1
7mer
506-524
0.005
0
6mer
671-693
0.003
0
RP11-1079K10.5
hsa-let-7a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000509950
Biotype: lincRNA
Gene id: ENSG00000249497
Gene Name: RP11-1079K10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-180
0.022
Not Conserved
6mer
1719-1734
0.003
1
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