LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
LINC00664
hsa-let-7a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3743-3759
0.024
0
6mer
1866-1883
0.002
1
XLOC_002291
hsa-let-7a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004419
Biotype: transcript isomorph
Gene id: XLOC_002291
Gene Name: XLOC_002291
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-38
0.026
1
LINC00899
hsa-let-7a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000421538
Biotype: retained_intron
Gene id: ENSG00000231711
Gene Name: LINC00899
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-135
0.026
0
RP11-532N4.2
hsa-let-7a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000610906
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-379
0.026
Not Conserved
LINC00500
hsa-let-7a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515860
Biotype: lincRNA
Gene id: ENSG00000249381
Gene Name: LINC00500
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
404-416
0.026
0
RP11-397C12.1
hsa-let-7a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424138
Biotype: antisense
Gene id: ENSG00000227466
Gene Name: RP11-397C12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-34
0.026
0
DISC2
hsa-let-7a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_002227.2
Biotype: antisense
Gene id: NR_002227.2 (gene)
Gene Name: DISC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-591
0.018
3
7mer
1970-1992
0.005
1
6mer
2362-2388
0.001
0
6mer
880-907
0.001
0
RP11-996F15.2
hsa-let-7a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553105
Biotype: antisense
Gene id: ENSG00000257176
Gene Name: RP11-996F15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
754-774
0.022
1
6mer
534-550
0.004
1
RP11-747H7.3
hsa-let-7a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3111-3129
0.015
1
6mer
792-811
0.003
1
6mer
3883-3906
0.002
1
6mer
5727-5744
0.002
1
6mer
4524-4542
0.002
2
6mer
4737-4755
0.002
1
RP11-279F6.1
hsa-let-7a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559029
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-63
0.026
1
LINC00470
hsa-let-7a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584492
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
758-773
0.011
0
7mer
266-280
0.009
Not Conserved
7mer
933-945
0.005
0
XLOC_002258
hsa-let-7a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004374
Biotype: transcript isomorph
Gene id: XLOC_002258
Gene Name: XLOC_002258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-97
0.022
Not Conserved
7mer
1197-1221
0.004
Not Conserved
LINC01182
hsa-let-7a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503532
Biotype: lincRNA
Gene id: ENSG00000250634
Gene Name: LINC01182
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-573
0.026
0
MIR143HG
hsa-let-7a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000614517
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2087-2109
0.016
1
9mer
1863-1885
0.006
0
6mer
4159-4179
0.001
1
6mer
2409-2421
0.001
0
6mer
2735-2757
0.001
1
6mer
2118-2140
0.001
1
LINC01206
hsa-let-7a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614303
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-645
0.023
0
6mer
361-384
0.003
1
TEX41
hsa-let-7a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451774
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1682-1702
0.012
1
7mer
294-318
0.007
Not Conserved
7mer
1320-1340
0.007
1
RP11-344E13.3
hsa-let-7a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583962
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3165-3183
0.019
Not Conserved
7mer
1784-1810
0.007
Not Conserved
RP11-279F6.1
hsa-let-7a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558781
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-164
0.026
1
LINC01206
hsa-let-7a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619662
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-185
0.026
0
RP11-68L18.1
hsa-let-7a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501194
Biotype: antisense
Gene id: ENSG00000246792
Gene Name: RP11-68L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-716
0.013
4
8mer
1152-1178
0.013
3
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