LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-79E3.3
hsa-let-7a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512581
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-381
0.021
1
6mer
6-31
0.006
0
AC007405.4
hsa-let-7a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442456
Biotype: lincRNA
Gene id: ENSG00000234350
Gene Name: AC007405.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-265
0.026
2
6mer
788-811
0.002
1
RP11-491F9.8
hsa-let-7a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569877
Biotype: lincRNA
Gene id: ENSG00000259957
Gene Name: RP11-491F9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-114
0.020
1
6mer
243-265
0.004
0
6mer
296-323
0.003
2
XLOC_008380
hsa-let-7a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018119
Biotype: transcript isomorph
Gene id: XLOC_008380
Gene Name: XLOC_008380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-36
0.025
4
6mer
584-601
0.002
0
RP11-61F12.1
hsa-let-7a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564809
Biotype: antisense
Gene id: ENSG00000261471
Gene Name: RP11-61F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1996-2016
0.015
2
6mer
357-384
0.005
2
6mer
2336-2355
0.004
0
6mer
1074-1097
0.002
1
XLOC_013502
hsa-let-7a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4116-4131
0.012
Not Conserved
8mer+wobble
394-409
0.007
0
6mer
3271-3295
0.003
0
6mer
682-704
0.003
0
6mer
747-767
0.002
Not Conserved
RP4-669L17.10
hsa-let-7a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-619
0.007
Not Conserved
6mer
451-470
0.005
1
7mer
218-236
0.005
0
8mer+wobble
1026-1038
0.004
Not Conserved
8mer+wobble
1088-1101
0.003
0
8mer+wobble
1751-1763
0.002
Not Conserved
8mer+wobble
1495-1519
0.001
Not Conserved
XLOC_013552
hsa-let-7a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028202
Biotype: transcript isomorph
Gene id: XLOC_013552
Gene Name: XLOC_013552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
140-155
0.003
1
6mer
108-130
0.003
Not Conserved
6mer
242-266
0.003
0
6mer
775-789
0.002
0
6mer
1808-1821
0.002
1
6mer
1601-1621
0.002
0
6mer
820-842
0.002
0
6mer
2430-2446
0.002
Not Conserved
6mer
1288-1312
0.002
0
6mer
2632-2656
0.001
Not Conserved
6mer
4197-4216
0.001
0
6mer
6114-6130
0.001
1
6mer
881-895
0.001
0
6mer
2158-2180
0.001
Not Conserved
6mer
933-948
0.001
0
RP11-675M1.2
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531176
Biotype: antisense
Gene id: ENSG00000254705
Gene Name: RP11-675M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-79
0.011
Not Conserved
6mer
396-400
0.006
2
6mer
276-294
0.004
1
6mer
623-640
0.004
0
6mer
600-622
0.002
0
RP11-343K8.3
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579285
Biotype: antisense
Gene id: ENSG00000264914
Gene Name: RP11-343K8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-58
0.027
1
AC025165.8
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000356672
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1679-1694
0.027
10
LINC01001
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1805-1826
0.007
Not Conserved
6mer
2353-2375
0.004
0
7mer
2188-2206
0.003
Not Conserved
6mer
1954-1973
0.003
0
8mer+wobble
661-673
0.003
Not Conserved
8mer+wobble
1386-1398
0.003
Not Conserved
8mer+wobble
905-929
0.002
Not Conserved
8mer+wobble
1323-1336
0.001
Not Conserved
C21orf90
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1506-1526
0.014
2
7mer
141-157
0.009
0
6mer
1014-1039
0.005
2
RAB4B-EGLN2
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2807-2831
0.023
8
8mer+wobble
897-920
0.003
5
RP11-115C21.2
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523225
Biotype: antisense
Gene id: ENSG00000246089
Gene Name: RP11-115C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
940-961
0.012
0
6mer
298-309
0.004
1
7mer
487-509
0.003
0
6mer
401-416
0.003
0
6mer
410-432
0.002
Not Conserved
6mer
516-531
0.002
0
RP4-760C5.5
hsa-let-7a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4121-4136
0.012
Not Conserved
8mer+wobble
399-414
0.007
0
6mer
3276-3300
0.003
0
6mer
687-709
0.003
0
6mer
752-772
0.002
Not Conserved
RP11-23J9.5
hsa-let-7a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000375204
Biotype: processed_transcript
Gene id: ENSG00000254876
Gene Name: RP11-23J9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
900-926
0.027
6
XLOC_008826
hsa-let-7a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4332-4352
0.011
0
6mer
4017-4033
0.004
0
6mer
4123-4143
0.004
0
6mer
2712-2734
0.003
1
6mer
869-890
0.002
Not Conserved
6mer
3326-3346
0.002
0
RP11-104H15.10
hsa-let-7a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3910-3931
0.013
7
7mer
1994-2020
0.007
9
7mer
822-845
0.003
3
6mer
4096-4117
0.002
5
6mer
2272-2291
0.001
2
RP11-364P22.1
hsa-let-7a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000455598
Biotype: lincRNA
Gene id: ENSG00000234111
Gene Name: RP11-364P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-463
0.024
0
6mer
819-844
0.003
0
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