LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2270F17.1
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518387
Biotype: antisense
Gene id: ENSG00000253647
Gene Name: CTD-2270F17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1058-1080
0.028
1
ZNF337-AS1
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428254
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-616
0.017
0
8mer
364-383
0.010
0
RP11-45L9.1
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504955
Biotype: antisense
Gene id: ENSG00000251175
Gene Name: RP11-45L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-373
0.028
3
RP11-434I12.3
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519134
Biotype: lincRNA
Gene id: ENSG00000253339
Gene Name: RP11-434I12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
289-311
0.025
0
6mer
378-386
0.003
1
XLOC_006028
hsa-let-7a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012984
Biotype: transcript isomorph
Gene id: XLOC_006028
Gene Name: XLOC_006028
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
780-802
0.028
1
XLOC_003973
hsa-let-7a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008501
Biotype: transcript isomorph
Gene id: XLOC_003973
Gene Name: XLOC_003973
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
30-48
0.028
0
RP11-318M2.3
hsa-let-7a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523775
Biotype: antisense
Gene id: ENSG00000253851
Gene Name: RP11-318M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-439
0.028
1
RP11-219B17.1
hsa-let-7a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559203
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-53
0.022
1
6mer
605-620
0.005
1
RP11-248E9.6
hsa-let-7a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548691
Biotype: lincRNA
Gene id: ENSG00000257940
Gene Name: RP11-248E9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-437
0.028
3
SVIL-AS1
hsa-let-7a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427063
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
632-655
0.014
1
7mer
1108-1134
0.012
1
6mer
1437-1455
0.002
Not Conserved
MIR646HG
hsa-let-7a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427691
Biotype: lincRNA
Gene id: ENSG00000228340
Gene Name: MIR646HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-287
0.027
0
MIR663AHG
hsa-let-7a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609914
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-251
0.027
0
RP11-434H6.6
hsa-let-7a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608909
Biotype: antisense
Gene id: ENSG00000273174
Gene Name: RP11-434H6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-542
0.027
0
AF001548.5
hsa-let-7a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574212
Biotype: antisense
Gene id: ENSG00000263335
Gene Name: AF001548.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
449-467
0.025
10
6mer
67-93
0.002
1
RP11-466L17.1
hsa-let-7a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422374
Biotype: lincRNA
Gene id: ENSG00000234810
Gene Name: RP11-466L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-560
0.014
1
7mer
3762-3777
0.006
0
6mer
757-783
0.003
1
6mer
3495-3510
0.002
Not Conserved
6mer
1909-1930
0.001
1
RP11-112J3.15
hsa-let-7a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425499
Biotype: antisense
Gene id: ENSG00000228843
Gene Name: RP11-112J3.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-167
0.027
1
PCBP1-AS1
hsa-let-7a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439670
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1416-1437
0.026
1
6mer
1006-1023
0.001
0
CTB-61M7.2
hsa-let-7a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594721
Biotype: lincRNA
Gene id: ENSG00000268734
Gene Name: CTB-61M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-221
0.022
1
6mer
330-355
0.005
0
RP11-15H20.6
hsa-let-7a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596483
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
434-449
0.024
0
6mer
316-339
0.003
0
AC009961.3
hsa-let-7a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607836
Biotype: lincRNA
Gene id: ENSG00000226266
Gene Name: AC009961.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
743-759
0.017
0
6mer
126-137
0.005
1
6mer
2168-2187
0.005
1
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