LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-404J23.1
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512036
Biotype: lincRNA
Gene id: ENSG00000250993
Gene Name: RP11-404J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-531
0.028
2
RP5-1014D13.2
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4349-4374
0.007
1
8mer
14277-14292
0.005
0
7mer
495-513
0.005
0
6mer
1870-1892
0.002
10
6mer
363-386
0.002
1
6mer
389-404
0.001
0
6mer
10225-10250
0.001
0
6mer
1464-1477
0.001
2
6mer
11254-11278
0.001
0
6mer
2524-2549
0.001
0
6mer
15045-15068
0.001
1
6mer
14556-14579
0.001
0
6mer
14700-14711
0.001
0
RP11-90B9.2
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560450
Biotype: sense_intronic
Gene id: ENSG00000259767
Gene Name: RP11-90B9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-332
0.024
1
6mer
203-226
0.002
0
6mer
221-244
0.002
0
RP11-655H13.2
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421481
Biotype: lincRNA
Gene id: ENSG00000223381
Gene Name: RP11-655H13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-367
0.020
Not Conserved
6mer
428-447
0.004
1
6mer
117-138
0.004
0
RP11-105N14.1
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604818
Biotype: lincRNA
Gene id: ENSG00000270659
Gene Name: RP11-105N14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-517
0.028
1
RP11-364P22.1
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509450
Biotype: lincRNA
Gene id: ENSG00000234111
Gene Name: RP11-364P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
349-365
0.026
0
6mer
721-746
0.002
0
RP11-196G18.22
hsa-let-7a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564237
Biotype: sense_overlapping
Gene id: ENSG00000261716
Gene Name: RP11-196G18.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3352-3369
0.018
0
7mer
432-448
0.008
0
6mer
2968-2992
0.001
1
6mer
3096-3116
0.001
0
MIAT
hsa-let-7a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000450203
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-421
0.024
1
6mer
92-113
0.004
1
LL0XNC01-116E7.2
hsa-let-7a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000614615
Biotype: antisense
Gene id: ENSG00000231728
Gene Name: LL0XNC01-116E7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1010-1030
0.002
Not Conserved
RP11-405M12.4
hsa-let-7a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613588
Biotype: lincRNA
Gene id: ENSG00000273669
Gene Name: RP11-405M12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
103-125
0.028
1
LCMT1-AS2
hsa-let-7a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-130
0.015
0
6mer
222-242
0.013
1
XLOC_002013
hsa-let-7a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004173
Biotype: transcript isomorph
Gene id: XLOC_002013
Gene Name: XLOC_002013
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
68-91
0.028
0
LINC00174
hsa-let-7a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
4364-4380
0.009
0
8mer+wobble
1574-1594
0.004
0
6mer
155-182
0.003
0
7mer
3220-3236
0.003
0
6mer
4060-4082
0.003
1
6mer
3950-3975
0.003
1
8mer+wobble
2759-2784
0.003
0
6mer
1431-1456
0.001
1
CTB-60B18.12
hsa-let-7a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597865
Biotype: antisense
Gene id: ENSG00000268108
Gene Name: CTB-60B18.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-200
0.028
0
ZNF337-AS1
hsa-let-7a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000420803
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-520
0.018
0
8mer
268-287
0.010
0
XXbac-BPG254F23.7
hsa-let-7a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
209-221
0.015
0
6mer
79-103
0.013
0
RP11-498M15.1
hsa-let-7a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549710
Biotype: lincRNA
Gene id: ENSG00000257515
Gene Name: RP11-498M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-35
0.028
1
LINC01002
hsa-let-7a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622667
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-41
0.013
Not Conserved
6mer
169-188
0.009
1
7mer
403-421
0.006
0
UBE2Q1-AS1
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441613
Biotype: antisense
Gene id: ENSG00000229780
Gene Name: UBE2Q1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.025
5
6mer
113-134
0.002
3
RP11-386M24.6
hsa-let-7a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620192
Biotype: antisense
Gene id: ENSG00000260337
Gene Name: RP11-386M24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-234
0.016
1
7mer
3281-3298
0.007
1
6mer
3325-3344
0.004
1
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