LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_005099
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010576
Biotype: transcript isomorph
Gene id: XLOC_005099
Gene Name: XLOC_005099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3834-3849
0.017
0
9mer
2096-2114
0.007
Not Conserved
6mer
215-233
0.003
Not Conserved
6mer
4151-4174
0.002
0
RP11-883A18.3
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579385
Biotype: lincRNA
Gene id: ENSG00000265728
Gene Name: RP11-883A18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-475
0.025
0
6mer
391-410
0.004
0
LINC00987
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_036466.1
Biotype: lincRNA
Gene id: NR_036466.1 (gene)
Gene Name: LINC00987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-179
0.014
0
6mer
2199-2219
0.006
2
6mer
2421-2434
0.005
1
7mer
1684-1703
0.004
1
LINC01002
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000617662
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-94
0.012
Not Conserved
7mer
456-474
0.008
0
6mer
222-241
0.008
1
XLOC_012997
hsa-let-7a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
583-603
0.022
1
6mer
358-381
0.004
0
6mer
810-831
0.003
0
LINC01206
hsa-let-7a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-207
0.024
0
6mer
2540-2556
0.002
4
6mer
1628-1650
0.001
1
6mer
4547-4565
0.001
0
XLOC_005715
hsa-let-7a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-96
0.016
0
7mer
333-346
0.013
0
LINC00987
hsa-let-7a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000427111
Biotype: lincRNA
Gene id: ENSG00000237248
Gene Name: LINC00987
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-179
0.014
0
6mer
2199-2219
0.006
2
6mer
2421-2434
0.005
1
7mer
1684-1703
0.004
1
LL22NC03-86G7.1
hsa-let-7a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35844-35861
0.005
6
7mer
26685-26700
0.004
1
7mer
23942-23960
0.003
0
7mer
5101-5123
0.002
1
7mer
26833-26859
0.002
1
6mer
14047-14070
0.001
1
6mer
32253-32277
0.001
1
6mer
11930-11950
0.001
1
6mer
11778-11800
0.001
1
6mer
1055-1079
0.001
Not Conserved
6mer
33589-33613
0.001
0
6mer
30200-30223
0.001
0
6mer
4427-4445
0.001
Not Conserved
6mer
28568-28590
0.001
3
6mer
24877-24897
0.001
0
6mer
11055-11078
0.001
1
6mer
1198-1221
0.001
0
6mer
27287-27309
0.001
0
6mer
29450-29472
0.001
0
HIF1A-AS1
hsa-let-7a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557544
Biotype: lincRNA
Gene id: ENSG00000258777
Gene Name: HIF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-79
0.029
2
RP11-104E19.1
hsa-let-7a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555300
Biotype: antisense
Gene id: ENSG00000258657
Gene Name: RP11-104E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-208
0.018
0
8mer+wobble
251-270
0.010
0
LINC01002
hsa-let-7a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614466
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-74
0.013
Not Conserved
6mer
202-221
0.008
1
7mer
436-454
0.008
0
XLOC_008618
hsa-let-7a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017678
Biotype: transcript isomorph
Gene id: XLOC_008618
Gene Name: XLOC_008618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1076-1094
0.021
2
6mer
516-528
0.004
1
7mer
1268-1291
0.004
1
XLOC_000191
hsa-let-7a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
147-169
0.029
1
RP11-77M5.1
hsa-let-7a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416401
Biotype: lincRNA
Gene id: ENSG00000237756
Gene Name: RP11-77M5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-458
0.029
1
XLOC_008538
hsa-let-7a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1407-1427
0.029
1
LINC01248
hsa-let-7a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420221
Biotype: antisense
Gene id: ENSG00000230090
Gene Name: LINC01248
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-236
0.028
0
RP11-343K8.3
hsa-let-7a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580184
Biotype: antisense
Gene id: ENSG00000264914
Gene Name: RP11-343K8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-27
0.028
1
XLOC_003204
hsa-let-7a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006588
Biotype: transcript isomorph
Gene id: XLOC_003204
Gene Name: XLOC_003204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2411-2436
0.023
0
6mer
198-222
0.005
0
RP11-110G21.1
hsa-let-7a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000423716
Biotype: antisense
Gene id: ENSG00000228801
Gene Name: RP11-110G21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-268
0.028
1
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