LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-206L10.3
hsa-let-7a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3762-3779
0.047
0
8mer+wobble
4597-4612
0.019
0
6mer
4615-4631
0.009
0
6mer
4015-4039
0.007
0
6mer
2079-2093
0.005
0
6mer
2824-2849
0.004
0
6mer
243-258
0.002
Not Conserved
6mer
379-404
0.002
Not Conserved
6mer
1119-1143
0.001
Not Conserved
6mer
1706-1721
0.001
Not Conserved
AC026806.2
hsa-let-7a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602211
Biotype: lincRNA
Gene id: ENSG00000268913
Gene Name: AC026806.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-349
0.089
2
6mer
367-380
0.005
0
RP11-401P9.1
hsa-let-7a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569940
Biotype: antisense
Gene id: ENSG00000260029
Gene Name: RP11-401P9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
910-925
0.089
5
6mer
652-674
0.002
Not Conserved
RP13-580B18.4
hsa-let-7a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2568-2584
0.006
Not Conserved
8mer
6001-6022
0.006
0
8mer
4259-4280
0.006
0
7mer
23673-23696
0.006
0
8mer
1925-1947
0.005
Not Conserved
8mer
15344-15365
0.004
Not Conserved
8mer
17086-17107
0.004
Not Conserved
8mer
22463-22474
0.004
Not Conserved
8mer
19547-19570
0.004
0
8mer
11515-11536
0.004
Not Conserved
8mer
9677-9698
0.004
Not Conserved
8mer+wobble
21529-21542
0.003
Not Conserved
8mer
13497-13518
0.003
Not Conserved
8mer
7791-7812
0.003
Not Conserved
6mer
23535-23554
0.003
0
8mer+wobble
12917-12929
0.002
0
8mer+wobble
3679-3691
0.002
0
6mer
19931-19956
0.002
0
8mer+wobble
21098-21122
0.002
0
8mer+wobble
19642-19660
0.002
0
8mer+wobble
19806-19832
0.002
0
8mer+wobble
18348-18360
0.002
Not Conserved
8mer+wobble
9097-9123
0.002
Not Conserved
8mer+wobble
10935-10961
0.002
Not Conserved
8mer+wobble
7211-7237
0.002
Not Conserved
8mer+wobble
5421-5447
0.002
Not Conserved
6mer
23939-23961
0.001
Not Conserved
6mer
21353-21375
0.001
0
6mer
5038-5056
0.001
Not Conserved
CASC7
hsa-let-7a-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2160-2181
0.043
10
7mer
952-966
0.021
11
7mer
6487-6505
0.010
10
6mer
529-541
0.005
8
6mer
9161-9185
0.005
0
6mer
3330-3352
0.002
6
6mer
5295-5311
0.001
1
XLOC_013703
hsa-let-7a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1079-1105
0.068
0
6mer
126-147
0.016
0
AC005162.5
hsa-let-7a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000411479
Biotype: antisense
Gene id: ENSG00000233517
Gene Name: AC005162.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
432-456
0.082
3
RP11-348P10.2
hsa-let-7a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606008
Biotype: lincRNA
Gene id: ENSG00000272077
Gene Name: RP11-348P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1466-1489
0.081
2
AC012499.1
hsa-let-7a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412133
Biotype: antisense
Gene id: ENSG00000229941
Gene Name: AC012499.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-596
0.069
1
7mer
155-173
0.012
4
XIST
hsa-let-7a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-248
0.063
1
7mer
7034-7048
0.006
3
7mer
5973-5989
0.005
0
7mer
12917-12932
0.003
1
6mer
10521-10541
0.002
1
6mer
17296-17322
0.001
Not Conserved
7mer
7015-7025
0.001
1
RP5-875H18.4
hsa-let-7a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000511361
Biotype: antisense
Gene id: ENSG00000250282
Gene Name: RP5-875H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12-28
0.075
1
6mer
54-68
0.006
2
RP11-80F22.14
hsa-let-7a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566562
Biotype: lincRNA
Gene id: ENSG00000261350
Gene Name: RP11-80F22.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-51
0.080
0
CTD-2195M15.3
hsa-let-7a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607594
Biotype: lincRNA
Gene id: ENSG00000271766
Gene Name: CTD-2195M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-59
0.079
1
CTD-3018O17.3
hsa-let-7a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596746
Biotype: lincRNA
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-324
0.047
1
7mer
239-257
0.032
1
MEG3
hsa-let-7a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521256
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-410
0.079
5
XLOC_001668
hsa-let-7a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-120
0.038
1
7mer
2144-2165
0.019
1
6mer
469-483
0.012
1
6mer
2702-2728
0.005
1
6mer
2404-2424
0.005
1
RP11-357K6.2
hsa-let-7a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538783
Biotype: lincRNA
Gene id: ENSG00000255814
Gene Name: RP11-357K6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-167
0.078
3
RP11-421M1.8
hsa-let-7a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606522
Biotype: lincRNA
Gene id: ENSG00000272097
Gene Name: RP11-421M1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
669-694
0.053
2
8mer
494-518
0.025
0
AP001055.6
hsa-let-7a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000424921
Biotype: lincRNA
Gene id: ENSG00000225331
Gene Name: AP001055.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-135
0.077
1
AC008067.2
hsa-let-7a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596783
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28-43
0.077
2
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