LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-664D7.4
hsa-let-7a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000512294
Biotype: antisense
Gene id: ENSG00000248801
Gene Name: RP11-664D7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1446-1464
0.024
7
8mer+wobble
1167-1189
0.003
1
6mer
1275-1298
0.002
1
LOC100506124
hsa-let-7a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_045375.1
Biotype: sense
Gene id: NR_045375.1 (gene)
Gene Name: LOC100506124
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-717
0.030
1
FAM95C
hsa-let-7a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
449-475
0.029
0
RP11-733D4.1
hsa-let-7a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456722
Biotype: lincRNA
Gene id: ENSG00000234580
Gene Name: RP11-733D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-45
0.029
2
AC011518.2
hsa-let-7a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593038
Biotype: lincRNA
Gene id: ENSG00000267133
Gene Name: AC011518.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-467
0.029
8
RP11-348J24.2
hsa-let-7a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2612-2626
0.018
1
7mer
2183-2208
0.007
3
7mer
740-761
0.005
2
XLOC_012843
hsa-let-7a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
948-971
0.025
1
6mer
422-436
0.004
1
RP11-167N4.2
hsa-let-7a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540886
Biotype: antisense
Gene id: ENSG00000255847
Gene Name: RP11-167N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-251
0.029
0
SMG7-AS1
hsa-let-7a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624060
Biotype: TEC
Gene id: ENSG00000232860
Gene Name: SMG7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-163
0.029
1
CRYM-AS1
hsa-let-7a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000444326
Biotype: lincRNA
Gene id: ENSG00000189149
Gene Name: CRYM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-88
0.025
0
6mer
1050-1062
0.002
0
6mer
858-883
0.002
0
RP11-379B18.5
hsa-let-7a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600280
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4-19
0.014
2
7mer
361-376
0.013
0
6mer
334-359
0.002
0
CTA-796E4.5
hsa-let-7a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17969-17989
0.009
0
7mer
24991-25014
0.004
0
8mer
25042-25061
0.003
0
6mer
3097-3112
0.002
1
6mer
17527-17542
0.002
0
6mer
13184-13197
0.001
Not Conserved
6mer
5632-5657
0.001
1
6mer
9886-9897
0.001
1
6mer
13451-13471
0.001
1
6mer
12646-12664
0.001
Not Conserved
6mer
19118-19135
0.001
0
6mer
18130-18145
0.001
0
6mer
14646-14667
0.001
Not Conserved
6mer
19629-19651
0.001
1
XLOC_013047
hsa-let-7a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026830
Biotype: transcript isomorph
Gene id: XLOC_013047
Gene Name: XLOC_013047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-300
0.023
1
6mer
323-345
0.003
1
6mer
898-917
0.002
Not Conserved
RP11-202D1.2
hsa-let-7a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
949-972
0.025
1
6mer
423-437
0.004
1
AC004893.11
hsa-let-7a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000468960
Biotype: antisense
Gene id: ENSG00000242687
Gene Name: AC004893.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-145
0.029
Not Conserved
SC22CB-109E1.1
hsa-let-7a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9450-9468
0.016
1
8mer
7398-7413
0.006
0
8mer+wobble
2428-2449
0.004
1
6mer
2159-2176
0.002
2
6mer
6287-6309
0.001
1
PRMT5-AS1
hsa-let-7a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1736-1750
0.023
10
6mer
1771-1786
0.006
8
RP11-15H20.6
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599922
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-326
0.026
0
6mer
193-216
0.003
0
MKNK1-AS1
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602433
Biotype: antisense
Gene id: ENSG00000269956
Gene Name: MKNK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1077-1095
0.029
3
RP11-574H6.1
hsa-let-7a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569928
Biotype: lincRNA
Gene id: ENSG00000261036
Gene Name: RP11-574H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-135
0.019
0
7mer
72-88
0.010
0
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