LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003262
hsa-let-7a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006666
Biotype: transcript isomorph
Gene id: XLOC_003262
Gene Name: XLOC_003262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
861-886
0.030
0
CTA-292E10.9
hsa-let-7a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
14676-14699
0.004
12
7mer
11677-11689
0.004
6
7mer
16528-16547
0.003
1
6mer
24650-24669
0.003
1
6mer
24181-24204
0.002
1
6mer
15441-15459
0.002
2
6mer
921-946
0.001
1
6mer
15587-15603
0.001
0
6mer
14352-14367
0.001
1
6mer
15003-15027
0.001
2
6mer
6307-6334
0.001
1
6mer
12068-12088
0.001
1
6mer
23329-23352
0.001
1
6mer
22306-22331
0.001
1
6mer
8307-8322
0.001
1
6mer
23018-23041
0.001
1
6mer
2990-3013
0.001
1
6mer
7158-7184
0.001
1
6mer
8841-8864
0.001
1
6mer
8867-8882
0.000
0
LINC00520
hsa-let-7a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560267
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-67
0.030
4
XLOC_001752
hsa-let-7a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003937
Biotype: transcript isomorph
Gene id: XLOC_001752
Gene Name: XLOC_001752
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Prostate Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-41
0.025
0
6mer
30-53
0.005
1
RP3-368A4.5
hsa-let-7a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603037
Biotype: sense_intronic
Gene id: ENSG00000271430
Gene Name: RP3-368A4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-149
0.025
1
6mer
2928-2947
0.003
1
6mer
2794-2806
0.001
Not Conserved
6mer
2029-2052
0.001
1
ZNF337-AS1
hsa-let-7a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414393
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-417
0.018
0
8mer
165-184
0.010
0
6mer
4220-4242
0.002
0
LINC00665
hsa-let-7a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1920-1937
0.011
0
6mer
472-494
0.009
1
6mer
2434-2454
0.007
0
6mer
1206-1229
0.003
0
XLOC_001719
hsa-let-7a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003915
Biotype: transcript isomorph
Gene id: XLOC_001719
Gene Name: XLOC_001719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-73
0.025
1
6mer
1733-1752
0.005
2
AC113167.2
hsa-let-7a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512941
Biotype: lincRNA
Gene id: ENSG00000249265
Gene Name: AC113167.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-135
0.030
9
RP11-68I3.7
hsa-let-7a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584986
Biotype: antisense
Gene id: ENSG00000264647
Gene Name: RP11-68I3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-259
0.030
4
LINC01206
hsa-let-7a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467313
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-196
0.030
0
SVIL-AS1
hsa-let-7a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414457
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-367
0.030
0
SVIL-AS1
hsa-let-7a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446807
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-617
0.027
0
6mer
309-323
0.003
2
DNAJC27-AS1
hsa-let-7a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451291
Biotype: antisense
Gene id: ENSG00000224165
Gene Name: DNAJC27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
424-446
0.024
2
6mer
397-423
0.006
3
AATK-AS1
hsa-let-7a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414089
Biotype: antisense
Gene id: ENSG00000225180
Gene Name: AATK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
846-871
0.030
0
LINC00421
hsa-let-7a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-329
0.030
0
RP11-491F9.1
hsa-let-7a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564875
Biotype: antisense
Gene id: ENSG00000260614
Gene Name: RP11-491F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-223
0.019
1
7mer
550-576
0.010
1
CTD-2552K11.2
hsa-let-7a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518633
Biotype: antisense
Gene id: ENSG00000253286
Gene Name: CTD-2552K11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-259
0.030
0
CH17-264L24.1
hsa-let-7a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8199-8226
0.015
0
6mer
7979-8006
0.004
0
8mer
4141-4163
0.004
0
6mer
5839-5859
0.002
0
6mer
3012-3038
0.002
0
6mer
5316-5342
0.001
0
6mer
2807-2818
0.001
0
6mer
3586-3603
0.001
0
XLOC_010290
hsa-let-7a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-329
0.030
0
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