LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-276H19.1
hsa-let-7a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415801
Biotype: lincRNA
Gene id: ENSG00000226237
Gene Name: RP11-276H19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
826-847
0.032
1
6mer
2246-2269
0.001
1
RP4-798P15.3
hsa-let-7a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-265
0.025
6
6mer
260-285
0.004
3
6mer
3027-3052
0.002
8
6mer
4398-4425
0.001
0
C1QTNF3-AMACR
hsa-let-7a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
556-577
0.033
1
PTPRD-AS2
hsa-let-7a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429581
Biotype: lincRNA
Gene id: ENSG00000226717
Gene Name: PTPRD-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
914-930
0.031
0
6mer
1648-1663
0.001
1
RP11-637A17.2
hsa-let-7a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500695
Biotype: lincRNA
Gene id: ENSG00000247363
Gene Name: RP11-637A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
715-739
0.033
0
RP11-231E6.1
hsa-let-7a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000486726
Biotype: lincRNA
Gene id: ENSG00000243081
Gene Name: RP11-231E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1389-1412
0.020
1
7mer
1017-1027
0.012
1
RP1-309I22.2
hsa-let-7a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18872-18888
0.011
2
6mer
28793-28810
0.004
1
7mer
5027-5043
0.003
Not Conserved
6mer
9538-9560
0.002
1
6mer
27618-27638
0.002
2
6mer
22672-22694
0.001
6
6mer
17799-17825
0.001
1
6mer
21083-21109
0.001
1
6mer
20926-20942
0.001
2
6mer
23031-23049
0.001
2
6mer
13312-13335
0.001
2
6mer
8723-8736
0.001
1
6mer
8100-8122
0.001
1
6mer
18920-18942
0.001
2
XLOC_000881
hsa-let-7a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001535
Biotype: transcript isomorph
Gene id: XLOC_000881
Gene Name: XLOC_000881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
455-470
0.026
1
6mer
230-252
0.005
1
6mer
332-354
0.001
Not Conserved
RP11-305D15.8
hsa-let-7a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613946
Biotype: antisense
Gene id: ENSG00000277684
Gene Name: RP11-305D15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-149
0.032
1
RP3-399L15.3
hsa-let-7a-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519104
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-98
0.028
0
6mer
63-87
0.004
0
AC006994.2
hsa-let-7a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412065
Biotype: antisense
Gene id: ENSG00000231294
Gene Name: AC006994.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-436
0.025
0
6mer
180-199
0.005
1
6mer
46-68
0.002
0
AC007563.1
hsa-let-7a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418591
Biotype: lincRNA
Gene id: ENSG00000236295
Gene Name: AC007563.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2392-2419
0.013
2
9mer
1810-1829
0.012
1
7mer
2794-2814
0.007
1
NUTM2B-AS1
hsa-let-7a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000419697
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-331
0.025
0
6mer
186-203
0.007
0
MIR646HG
hsa-let-7a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431181
Biotype: lincRNA
Gene id: ENSG00000228340
Gene Name: MIR646HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-497
0.032
0
RP11-752L20.5
hsa-let-7a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509370
Biotype: lincRNA
Gene id: ENSG00000251688
Gene Name: RP11-752L20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
941-967
0.010
1
7mer
324-341
0.010
0
8mer
539-554
0.010
1
6mer
410-436
0.002
0
XLOC_011222
hsa-let-7a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023376
Biotype: transcript isomorph
Gene id: XLOC_011222
Gene Name: XLOC_011222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-148
0.032
0
XLOC_010579
hsa-let-7a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022264
Biotype: transcript isomorph
Gene id: XLOC_010579
Gene Name: XLOC_010579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-505
0.016
0
7mer
122-141
0.016
0
RP11-53O19.1
hsa-let-7a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503179
Biotype: antisense
Gene id: ENSG00000251141
Gene Name: RP11-53O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-114
0.032
1
LINC01350
hsa-let-7a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609066
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-381
0.032
0
XLOC_008295
hsa-let-7a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2427-2445
0.019
0
6mer
555-580
0.009
0
6mer
4105-4126
0.005
0
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