LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
AC073628.1
hsa-let-7a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443419
Biotype: lincRNA
Gene id: ENSG00000233605
Gene Name: AC073628.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
286-303
0.022
1
7mer
406-418
0.013
Not Conserved
AC073628.1
hsa-let-7a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110286.1
Biotype: lincRNA
Gene id: NR_110286.1 (gene)
Gene Name: AC073628.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
286-303
0.022
1
7mer
406-418
0.013
Not Conserved
RP11-420K14.8
hsa-let-7a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593824
Biotype: lincRNA
Gene id: ENSG00000268184
Gene Name: RP11-420K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-306
0.035
0
AC138430.4
hsa-let-7a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4823-4847
0.026
5
6mer
5019-5036
0.004
2
6mer
582-605
0.001
1
6mer
2020-2031
0.001
0
6mer
2380-2399
0.001
1
6mer
2793-2810
0.001
1
XLOC_000373
hsa-let-7a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001131
Biotype: transcript isomorph
Gene id: XLOC_000373
Gene Name: XLOC_000373
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-360
0.032
1
6mer
204-222
0.002
0
RP11-572C21.1
hsa-let-7a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502221
Biotype: lincRNA
Gene id: ENSG00000251536
Gene Name: RP11-572C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1779
0.034
1
RP5-1125A11.7
hsa-let-7a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618285
Biotype: lincRNA
Gene id: ENSG00000276073
Gene Name: RP5-1125A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1689-1711
0.015
1
7mer
2753-2773
0.006
0
6mer
3279-3304
0.005
1
8mer+wobble
2515-2536
0.004
1
6mer
790-811
0.002
0
6mer
2376-2401
0.001
1
6mer
2058-2080
0.001
1
XLOC_013553
hsa-let-7a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2425-2444
0.011
0
6mer
216-237
0.006
1
8mer
4056-4075
0.005
0
7mer
2490-2507
0.004
1
7mer
4124-4141
0.004
1
6mer
1120-1145
0.003
0
6mer
4497-4510
0.001
Not Conserved
XLOC_000462
hsa-let-7a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001200
Biotype: transcript isomorph
Gene id: XLOC_000462
Gene Name: XLOC_000462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-580
0.030
2
6mer
567-589
0.004
1
A2ML1-AS1
hsa-let-7a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537288
Biotype: antisense
Gene id: ENSG00000256661
Gene Name: A2ML1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-148
0.034
0
XLOC_009114
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019282
Biotype: transcript isomorph
Gene id: XLOC_009114
Gene Name: XLOC_009114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-429
0.030
1
6mer
140-159
0.004
0
RP11-693J15.5
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9880-9895
0.010
2
7mer
2758-2775
0.005
1
7mer
7718-7733
0.005
1
7mer
8065-8092
0.005
Not Conserved
7mer
7332-7345
0.003
1
6mer
711-716
0.003
1
6mer
5781-5805
0.002
1
6mer
6534-6557
0.001
1
6mer
2610-2623
0.001
0
CTA-342B11.3
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12804-12831
0.006
1
8mer
13102-13124
0.005
1
7mer
14525-14550
0.003
0
6mer
10572-10596
0.002
1
8mer
10697-10719
0.002
0
6mer
2423-2444
0.002
1
6mer
18372-18393
0.002
1
8mer
20697-20712
0.001
0
6mer
15077-15088
0.001
0
6mer
20019-20042
0.001
0
6mer
8721-8730
0.001
0
6mer
14786-14803
0.001
1
6mer
12569-12591
0.001
1
6mer
21415-21438
0.001
Not Conserved
6mer
10930-10953
0.001
0
6mer
9906-9929
0.001
0
6mer
21932-21957
0.001
Not Conserved
6mer
22728-22754
0.001
Not Conserved
6mer
20672-20694
0.001
0
PRMT5-AS1
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000587245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-165
0.028
10
6mer
186-201
0.006
8
RP11-506B6.6
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590293
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-423
0.029
2
6mer
249-271
0.005
2
RP5-991G20.6
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624116
Biotype: lincRNA
Gene id: ENSG00000279206
Gene Name: RP5-991G20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-251
0.034
1
CTD-3222D19.12
hsa-let-7a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595909
Biotype: lincRNA
Gene id: ENSG00000269399
Gene Name: CTD-3222D19.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1957-1973
0.032
1
6mer
1167-1189
0.002
1
LINC01350
hsa-let-7a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608417
Biotype: lincRNA
Gene id: ENSG00000228309
Gene Name: LINC01350
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-442
0.034
0
ENOX1-AS1
hsa-let-7a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1456-1478
0.027
2
6mer
176-196
0.005
1
6mer
2854-2863
0.002
0
CTD-2579N5.3
hsa-let-7a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600673
Biotype: lincRNA
Gene id: ENSG00000268296
Gene Name: CTD-2579N5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-175
0.034
0
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