LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
RP11-796E2.4
hsa-let-7a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
936-954
0.016
1
8mer+wobble
3176-3193
0.006
4
7mer
2668-2687
0.006
0
6mer
4852-4879
0.003
3
6mer
2452-2468
0.003
5
6mer
3224-3236
0.001
0
XLOC_006491
hsa-let-7a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014334
Biotype: transcript isomorph
Gene id: XLOC_006491
Gene Name: XLOC_006491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-38
0.036
2
RP4-671O14.7
hsa-let-7a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16307-16327
0.009
1
8mer+wobble
9424-9445
0.005
0
8mer
11261-11283
0.005
0
6mer
18977-18993
0.004
1
7mer
13487-13505
0.004
1
7mer
3681-3696
0.003
0
6mer
442-463
0.002
Not Conserved
6mer
11754-11772
0.001
1
6mer
10009-10032
0.001
1
6mer
6500-6523
0.001
Not Conserved
6mer
5862-5885
0.000
Not Conserved
XLOC_001548
hsa-let-7a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003750
Biotype: transcript isomorph
Gene id: XLOC_001548
Gene Name: XLOC_001548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-486
0.036
1
KB-1552D7.2
hsa-let-7a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622091
Biotype: sense_intronic
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1483-1500
0.031
3
6mer
763-781
0.004
6
KB-1552D7.2
hsa-let-7a-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000319051
Biotype: pseudogene
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1482-1499
0.031
3
6mer
763-781
0.004
6
RP11-44N22.3
hsa-let-7a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610134
Biotype: retained_intron
Gene id: ENSG00000272702
Gene Name: RP11-44N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
684-703
0.023
3
7mer
2084-2097
0.009
2
6mer
983-1008
0.003
3
LOC101926935
hsa-let-7a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6110-6131
0.014
0
6mer
6126-6149
0.013
0
8mer+wobble
2540-2561
0.008
0
6mer
1930-1952
0.001
Not Conserved
XLOC_004611
hsa-let-7a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010144
Biotype: transcript isomorph
Gene id: XLOC_004611
Gene Name: XLOC_004611
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
32-48
0.020
0
7mer
756-781
0.016
0
AC005789.11
hsa-let-7a-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588453
Biotype: lincRNA
Gene id: ENSG00000267473
Gene Name: AC005789.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
904-925
0.024
7
6mer
1267-1286
0.004
3
6mer
1137-1156
0.004
4
6mer
280-291
0.003
0
RP11-23J9.4
hsa-let-7a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000375206
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-912
0.026
6
8mer
2225-2237
0.008
3
7mer
4736-4761
0.001
0
RP11-309L24.4
hsa-let-7a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-173
0.028
4
6mer
185-211
0.005
8
6mer
2705-2726
0.001
0
6mer
1523-1545
0.001
0
CTB-119C2.1
hsa-let-7a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608362
Biotype: antisense
Gene id: ENSG00000273237
Gene Name: CTB-119C2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-666
0.025
2
6mer
78-96
0.006
1
6mer
669-685
0.004
1
RP11-448A19.1
hsa-let-7a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608694
Biotype: lincRNA
Gene id: ENSG00000273329
Gene Name: RP11-448A19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-627
0.026
0
6mer
6955-6974
0.003
0
6mer
5314-5333
0.003
6
6mer
4575-4586
0.001
3
6mer
5786-5810
0.001
1
6mer
2058-2081
0.001
0
6mer
3564-3587
0.001
1
6mer
5234-5252
0.000
0
XLOC_008669
hsa-let-7a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018389
Biotype: transcript isomorph
Gene id: XLOC_008669
Gene Name: XLOC_008669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
48-71
0.033
1
6mer
207-232
0.002
Not Conserved
RP11-114G22.1
hsa-let-7a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540994
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-99
0.022
1
8mer+mismatch
189-215
0.013
8
P2RX5-TAX1BP3
hsa-let-7a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037928.1
Biotype: sense
Gene id: NR_037928.1 (gene)
Gene Name: P2RX5-TAX1BP3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4870-4893
0.030
4
8mer
2907-2922
0.003
0
6mer
3654-3675
0.001
1
6mer
2085-2100
0.001
1
6mer
3199-3222
0.001
1
6mer
2785-2808
0.000
0
RP4-591N18.2
hsa-let-7a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000417123
Biotype: antisense
Gene id: ENSG00000232564
Gene Name: RP4-591N18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-452
0.035
1
RP11-1102P16.1
hsa-let-7a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519927
Biotype: lincRNA
Gene id: ENSG00000253379
Gene Name: RP11-1102P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-108
0.035
2
C1orf200
hsa-let-7a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000377320
Biotype: antisense
Gene id: ENSG00000179840
Gene Name: C1orf200
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-82
0.031
0
6mer
1469-1488
0.003
2
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