LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000303
hsa-let-7a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001038
Biotype: transcript isomorph
Gene id: XLOC_000303
Gene Name: XLOC_000303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2542-2567
0.021
2
8mer
920-942
0.007
0
7mer
2294-2313
0.007
3
6mer
2054-2079
0.002
1
RP11-429P3.5
hsa-let-7a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566770
Biotype: antisense
Gene id: ENSG00000260381
Gene Name: RP11-429P3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
612-628
0.033
1
6mer
266-290
0.004
1
RP1-137D17.1
hsa-let-7a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440168
Biotype: lincRNA
Gene id: ENSG00000226194
Gene Name: RP1-137D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1505-1517
0.029
1
6mer
24-48
0.006
0
6mer
2100-2122
0.002
0
AC002519.8
hsa-let-7a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2323-2336
0.028
1
6mer
1953-1964
0.009
1
SVIL-AS1
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000423223
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-364
0.037
0
PRMT5-AS1
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000595662
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-168
0.030
10
6mer
189-204
0.006
8
RP11-124N3.2
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513955
Biotype: lincRNA
Gene id: ENSG00000251487
Gene Name: RP11-124N3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-305
0.037
0
RP11-497G19.2
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552718
Biotype: lincRNA
Gene id: ENSG00000257654
Gene Name: RP11-497G19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-354
0.037
1
AATK-AS1
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571031
Biotype: antisense
Gene id: ENSG00000225180
Gene Name: AATK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1072-1085
0.035
0
6mer
889-907
0.002
0
RP11-23J9.5
hsa-let-7a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000527128
Biotype: retained_intron
Gene id: ENSG00000254876
Gene Name: RP11-23J9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
934-960
0.034
6
6mer
1396-1419
0.003
0
LINC00520
hsa-let-7a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_026797.1
Biotype: lincRNA
Gene id: NR_026797.1 (gene)
Gene Name: LINC00520
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-67
0.034
4
6mer
387-408
0.003
1
ZRANB2-AS2
hsa-let-7a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000596952
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-440
0.037
1
RP11-164J13.1
hsa-let-7a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549793
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2737-2759
0.021
6
6mer
147-167
0.006
6
6mer
2468-2487
0.006
8
6mer
2783-2802
0.003
2
6mer
1460-1479
0.002
10
XLOC_001882
hsa-let-7a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004043
Biotype: transcript isomorph
Gene id: XLOC_001882
Gene Name: XLOC_001882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-303
0.022
2
7mer
399-415
0.009
1
7mer
412-422
0.006
0
LL22NC03-2H8.5
hsa-let-7a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610778
Biotype: lincRNA
Gene id: ENSG00000274422
Gene Name: LL22NC03-2H8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-349
0.036
0
RP5-1065P14.2
hsa-let-7a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433734
Biotype: lincRNA
Gene id: ENSG00000236975
Gene Name: RP5-1065P14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-334
0.036
0
RP11-266K4.13
hsa-let-7a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1258-1280
0.036
0
XLOC_007698
hsa-let-7a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016324
Biotype: transcript isomorph
Gene id: XLOC_007698
Gene Name: XLOC_007698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-23
0.036
2
AC004893.11
hsa-let-7a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000482799
Biotype: antisense
Gene id: ENSG00000242687
Gene Name: AC004893.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-242
0.036
Not Conserved
RP11-443G13.2
hsa-let-7a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584815
Biotype: antisense
Gene id: ENSG00000263674
Gene Name: RP11-443G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
261-283
0.036
0
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