LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
MEG3
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046469.1
Biotype: lincRNA
Gene id: NR_046469.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1503-1525
0.039
5
RP1-27K12.4
hsa-let-7a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000508884
Biotype: antisense
Gene id: ENSG00000249379
Gene Name: RP1-27K12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-543
0.039
11
XLOC_000648
hsa-let-7a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001360
Biotype: transcript isomorph
Gene id: XLOC_000648
Gene Name: XLOC_000648
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
997-1019
0.039
1
AC025165.8
hsa-let-7a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000593846
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-100
0.038
10
STX16-NPEPL1
hsa-let-7a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3553-3571
0.019
10
8mer
1287-1306
0.016
5
6mer
3205-3229
0.002
2
6mer
287-308
0.001
1
RP11-384K6.6
hsa-let-7a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1187-1210
0.014
1
8mer
3940-3952
0.007
Not Conserved
8mer+wobble
1904-1916
0.003
0
8mer+wobble
3667-3693
0.003
Not Conserved
6mer
551-569
0.003
0
6mer
3547-3565
0.003
Not Conserved
8mer+wobble
2376-2400
0.002
0
8mer+wobble
1966-1979
0.002
0
6mer
1326-1348
0.001
0
RP11-967K21.1
hsa-let-7a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000473753
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-651
0.020
5
8mer+wobble
153-174
0.012
1
7mer
385-399
0.007
0
RP1-121G13.2
hsa-let-7a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411442
Biotype: antisense
Gene id: ENSG00000228082
Gene Name: RP1-121G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-328
0.038
2
XLOC_008608
hsa-let-7a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017868
Biotype: transcript isomorph
Gene id: XLOC_008608
Gene Name: XLOC_008608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
580-598
0.019
Not Conserved
7mer
797-817
0.012
0
6mer
659-678
0.003
1
6mer
348-369
0.003
0
MEG3
hsa-let-7a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398461
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3335-3357
0.034
5
6mer
393-408
0.003
1
6mer
502-525
0.002
0
RP11-514D23.1
hsa-let-7a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000599486
Biotype: lincRNA
Gene id: ENSG00000268532
Gene Name: RP11-514D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1999-2024
0.032
1
6mer
629-653
0.003
2
6mer
78-99
0.002
0
NUTM2B-AS1
hsa-let-7a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430963
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-331
0.030
0
6mer
186-203
0.008
0
RP11-22A3.2
hsa-let-7a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506899
Biotype: lincRNA
Gene id: ENSG00000250371
Gene Name: RP11-22A3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2482-2499
0.038
2
RP11-164J13.1
hsa-let-7a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000466369
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3015-3037
0.022
6
6mer
147-167
0.006
6
6mer
2746-2765
0.006
8
6mer
3061-3080
0.003
2
6mer
1738-1757
0.002
10
XLOC_011813
hsa-let-7a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024297
Biotype: transcript isomorph
Gene id: XLOC_011813
Gene Name: XLOC_011813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1999-2024
0.032
1
6mer
629-653
0.003
2
6mer
78-99
0.002
0
XLOC_006460
hsa-let-7a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1473-1488
0.025
0
RP11-514D23.1
hsa-let-7a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_038438.1
Biotype: lincRNA
Gene id: NR_038438.1 (gene)
Gene Name: RP11-514D23.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1995-2020
0.032
1
6mer
625-649
0.003
2
6mer
74-95
0.002
0
PCBP1-AS1
hsa-let-7a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604346
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-412
0.037
1
RP11-164J13.1
hsa-let-7a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000495723
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3395-3417
0.022
6
6mer
147-167
0.006
6
6mer
3126-3145
0.005
8
6mer
3441-3460
0.003
2
6mer
1460-1479
0.002
10
CTD-2130O13.1
hsa-let-7a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000600127
Biotype: lincRNA
Gene id: ENSG00000267761
Gene Name: CTD-2130O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-238
0.037
1
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