LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-let-7a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2314G24.2
hsa-let-7a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-49
0.030
2
6mer
6520-6540
0.005
6
6mer
6039-6057
0.003
1
6mer
5875-5887
0.002
1
AP000708.1
hsa-let-7a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527818
Biotype: antisense
Gene id: ENSG00000255537
Gene Name: AP000708.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3128-3145
0.024
1
7mer
2607-2626
0.006
0
6mer
421-448
0.003
1
6mer
161-176
0.003
Not Conserved
6mer
597-619
0.002
1
6mer
960-976
0.002
1
MEG3
hsa-let-7a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1585-1607
0.040
5
MEG3
hsa-let-7a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000519709
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1622-1644
0.040
5
RP11-301G19.1
hsa-let-7a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1472-1496
0.016
0
6mer
1219-1242
0.011
0
6mer
921-948
0.010
0
6mer
235-256
0.003
Not Conserved
LINC00948
hsa-let-7a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600486
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
165-185
0.040
2
MEG3
hsa-let-7a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398474
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1626
0.039
5
DSCR8
hsa-let-7a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026841.1
Biotype: sense
Gene id: NR_026841.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-555
0.039
5
RP11-103C16.2
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000417390
Biotype: antisense
Gene id: ENSG00000227945
Gene Name: RP11-103C16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-315
0.039
14
MEG3
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429159
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1489-1511
0.039
5
MEG3
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046467.1
Biotype: lincRNA
Gene id: NR_046467.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1641-1663
0.039
5
DSCR8
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026840.1
Biotype: sense
Gene id: NR_026840.1 (gene)
Gene Name: DSCR8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
552-573
0.039
5
XLOC_013420
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027431
Biotype: transcript isomorph
Gene id: XLOC_013420
Gene Name: XLOC_013420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-249
0.039
0
MEG3
hsa-let-7a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000524035
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2736-2758
0.039
5
MEG3
hsa-let-7a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046464.1
Biotype: lincRNA
Gene id: NR_046464.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1537-1559
0.039
5
LRRC37A5P
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_034087.1
Biotype: lincRNA
Gene id: NR_034087.1 (gene)
Gene Name: LRRC37A5P
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-225
0.039
1
XLOC_001430
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003638
Biotype: transcript isomorph
Gene id: XLOC_001430
Gene Name: XLOC_001430
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
868-887
0.032
1
7mer
331-343
0.007
1
MEG3
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046472.1
Biotype: lincRNA
Gene id: NR_046472.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1527-1549
0.039
5
MEG3
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554639
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1590-1612
0.039
5
RP11-392E22.10
hsa-let-7a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566538
Biotype: processed_transcript
Gene id: ENSG00000272934
Gene Name: RP11-392E22.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-let-7a-5p
Sequence: ugagguaguagguuguauaguu
MirBase ID: MIMAT0000062
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
89-115
0.039
0
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